View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12676_low_2 (Length: 294)
Name: NF12676_low_2
Description: NF12676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12676_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 41448073 - 41448338
Alignment:
| Q |
16 |
aggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaaga |
115 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41448073 |
aggagaaggtgatttttgatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactagcattgttattgctatcaaaaga |
41448172 |
T |
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| Q |
116 |
cttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaatctacttgattaaatcatttgctcatcataattaagaagcaaatagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448173 |
cttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaatctacttgattaaatcatttgctcatcataattaagaagcaaatagt |
41448272 |
T |
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| Q |
216 |
ttctctgttacattgttaaataattcaaaaaagaaagtctcaatttgtttagtctcattcttgttc |
281 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41448273 |
ttctctgttacattgttaaataattcaaaaaataaagtctcaatttgtttagtctcattcttgttc |
41448338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 41458447 - 41458646
Alignment:
| Q |
16 |
aggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaaga |
115 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41458447 |
aggagaaggtagttttggagcagtttttaagggttggattgatgagaattcattttctgctgccaaacctggcattggcattgttattgctatcaaaagc |
41458546 |
T |
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| Q |
116 |
cttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaatctacttgattaaatcatttgctcatcataattaagaagcaaatagt |
215 |
Q |
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| T |
41458547 |
cttaatcaagaaagcttccgaagtcacagggagtggttggttagtttaata----tacttgtttaaatcatttgcttttgataattaagaagcagatagt |
41458642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 41441665 - 41441814
Alignment:
| Q |
16 |
aggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaaga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| || |||||||| ||||||||| | |||||| |
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| T |
41441665 |
aggagaaggtggttttggatcagtttttaagggttggatcgatgagaatacattggttgctgccaaaccgggtactggcatagttattgctgttaaaaga |
41441764 |
T |
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| Q |
116 |
cttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaat |
165 |
Q |
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||| ||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
41441765 |
cttaatcaagaaagcttccagggtcacagggagtggttggtgagtttaat |
41441814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 23827901 - 23828012
Alignment:
| Q |
16 |
aggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaaga |
115 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||| | ||||| |||||||| |
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| T |
23827901 |
aggagatggtgattttggatcagtttttaagggttggattgatgaacattcatcttctgctgcaaaacctggcacaggcattgctgttgctgtcaaaaga |
23828000 |
T |
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| Q |
116 |
cttcatcaagat |
127 |
Q |
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|||||||||||| |
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| T |
23828001 |
cttcatcaagat |
23828012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 23818706 - 23818854
Alignment:
| Q |
16 |
aggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaaga |
115 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| | ||||| |||||||| |
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| T |
23818706 |
aggagatggtgattttggatcagtttttaagggttggattgatgaacgttcatcttctgctgccaaacctggcacaggcattactgttgctgtcaaaaga |
23818805 |
T |
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| Q |
116 |
cttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaa |
164 |
Q |
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||| | || |||||| | ||||||||| |||| |||||| ||||||| |
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| T |
23818806 |
cttaaccaggatggcctcaaaggtcacaatgagttgttggttagtttaa |
23818854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 23823988 - 23824089
Alignment:
| Q |
28 |
ttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagat |
127 |
Q |
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||||||||||||||||||||| |||||||||| | ||| | ||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
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| T |
23823988 |
ttttggatcagtttttaagggccggattgatgaacactcactttctgctgccaaacctggcacaggcattgccgttgctgtcaaaagacttaatcaagat |
23824087 |
T |
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| Q |
128 |
gg |
129 |
Q |
| |
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|| |
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| T |
23824088 |
gg |
23824089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 23831912 - 23832038
Alignment:
| Q |
38 |
gtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaag |
137 |
Q |
| |
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||||| ||||||||||||||||| | |||| ||||||||||||| |||| ||||||| | |||| ||||||||||| |||| |||||||| ||| |
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| T |
23831912 |
gttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaag |
23832011 |
T |
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| Q |
138 |
gtcacagggagtggttggtgagtttaa |
164 |
Q |
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|||||| ||||| ||| || ||||||| |
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| T |
23832012 |
gtcacaaggagttgtttgtaagtttaa |
23832038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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