View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12677_high_2 (Length: 341)
Name: NF12677_high_2
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 2008270 - 2007939
Alignment:
| Q |
1 |
aacaatttgtagagccttaggatgaacatctaatttgtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2008270 |
aacaatttgtagagccttaggatgaacatccaatttgtgggtcctaagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaa |
2008171 |
T |
|
| Q |
101 |
agctccatagaaagacacctcctcatccctacctaactagacatgatannnnnnnggtaaaacgggtttacaattccatcaaacatgaatgaaataaaac |
200 |
Q |
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| T |
2008170 |
aactccatagaaagacacctcctcatccctacctaactagacatgatatttttttggtaaaacgggtttacacttccatcaaacatgaatgaaataaaac |
2008071 |
T |
|
| Q |
201 |
catcaaatactgcagtgacctatggaactccaaaatgcattttatactccaatattctcatgggacgagacagagaatcaactacaagtttttgttgttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2008070 |
aatcaaatactgcagtgacctatggaactccaaaatgcattttatactccaatattctcatgggacgagacatagaatcaactacaagtttttgttgttc |
2007971 |
T |
|
| Q |
301 |
aaaacagcgtgttcaatcacagcacagtgaac |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
2007970 |
aaaacagcgtgttcaatcacagcacagtgaac |
2007939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 2003774 - 2003667
Alignment:
| Q |
37 |
gtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacc-tcctcatccctaccta |
135 |
Q |
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||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||||| |||||||| |||||| |
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| T |
2003774 |
gtgggtcctaagctataagactctaacatctcctatcaaaatcatgcgatcttagaacatcaaaacct-cgtagaaagacaccaccctcatccttaccta |
2003676 |
T |
|
| Q |
136 |
actagacat |
144 |
Q |
| |
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|||| |||| |
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| T |
2003675 |
actatacat |
2003667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 2003238 - 2003127
Alignment:
| Q |
33 |
atttgtgggtcataagctatgagactgtaacatctcctatcaaaatcatgcaatcttagaacaccaaaagctccatagaaagacacc-tcctcatcccta |
131 |
Q |
| |
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||||||||||| ||||| || ||||| ||||||||| |||||||||||||| |||||||||||| ||||| | | |||||||||||| ||||||| || |
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| T |
2003238 |
atttgtgggtcctaagcaataagactttaacatctcttatcaaaatcatgcgatcttagaacactaaaag-ttcgtagaaagacaccaccctcatcatta |
2003140 |
T |
|
| Q |
132 |
cctaactagacat |
144 |
Q |
| |
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|||||||| |||| |
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|
| T |
2003139 |
cctaactatacat |
2003127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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