View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12677_high_4 (Length: 278)
Name: NF12677_high_4
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 25175272 - 25175012
Alignment:
| Q |
1 |
aaaagaaagttgaaccaaaagttcaacaaccaaagataccattaccaaacaatattgtaagacctgaacaaattctttttaggtatccatcacaaaatgc |
100 |
Q |
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| T |
25175272 |
aaaagaaagttgaaccaaaagttcaacaaccaaagataccattaccaaacaatattgtaagacctgaacaaattctttttaggtatccatcacaaaatgc |
25175173 |
T |
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| Q |
101 |
aacaagtagaagaagaaattttagagagaaaaaatgggatgtgtatggtggattagaagaaaaagctaaggatttatcagaagtttttcaaaatgagttc |
200 |
Q |
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| T |
25175172 |
aacaagtagaaggagaaatttgagagagaaaaaatgggatgtgtatggtggattagaagaaaaagctaaggatttatcagaagtttttcaaaatgagttc |
25175073 |
T |
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| Q |
201 |
actagtaaaagaaacattgaacattttaagaaaggagagagttctttgtattatggtttat |
261 |
Q |
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| T |
25175072 |
actagtaaaagaaacattgaacattttaagaaaggagagagttctttgtattatggtttat |
25175012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 29592005 - 29591908
Alignment:
| Q |
83 |
gtatccatcacaaaatgcaacaagtagaagaagaaattttagagagaaaaaatgggatgtgtatggtggattagaagaaaaagctaaggatttatcag |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | ||| |||| |||||| ||||| | |||||| ||||||||||| ||||||||| |
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| T |
29592005 |
gtatccatcacaaaatgcaacaagtagaagaagaaatttcaccgggaagaaattggatgtatatggcgatttagaacaaaaagctaagaatttatcag |
29591908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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