View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12677_low_1 (Length: 602)
Name: NF12677_low_1
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 53491812 - 53491223
Alignment:
| Q |
1 |
ttgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491812 |
ttgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctact |
53491713 |
T |
|
| Q |
101 |
cgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattgga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491712 |
cgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattgga |
53491613 |
T |
|
| Q |
201 |
gcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53491612 |
gcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttg |
53491513 |
T |
|
| Q |
301 |
atactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491512 |
atactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctg |
53491413 |
T |
|
| Q |
401 |
aaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgtt |
500 |
Q |
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| T |
53491412 |
aaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgtt |
53491313 |
T |
|
| Q |
501 |
gttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491312 |
gttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 9 - 590
Target Start/End: Complemental strand, 53499397 - 53498819
Alignment:
| Q |
9 |
gacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53499397 |
gacaaaagtttgctgaaaagttcgaggtaaaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgt |
53499298 |
T |
|
| Q |
109 |
aagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
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| T |
53499297 |
aagcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggt |
53499198 |
T |
|
| Q |
209 |
gatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaa |
308 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499197 |
gatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaa |
53499098 |
T |
|
| Q |
309 |
ggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||| |
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|
| T |
53499097 |
ggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagagatagctactctcctgaaaagaag |
53498999 |
T |
|
| Q |
409 |
tattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctct |
508 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| |||||||||||| |
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|
| T |
53498998 |
tattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttgctct |
53498899 |
T |
|
| Q |
509 |
tatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
590 |
Q |
| |
|
|||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
53498898 |
tatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 189 - 535
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
189 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
288 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
289 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
388 |
Q |
| |
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||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
389 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
488 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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|
| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
489 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
535 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 16070513 - 16070390
Alignment:
| Q |
1 |
ttgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctact |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||| |||| |||||||||| ||||| ||||||| |||||||||||||||| |||||||| | ||||||| |
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| T |
16070513 |
ttgtttgggacaaaagtttgctgagaagtttgagataaactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctact |
16070414 |
T |
|
| Q |
101 |
cgaactgtaagcttttaatgtcta |
124 |
Q |
| |
|
||||||||||||||| |||||||| |
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|
| T |
16070413 |
cgaactgtaagctttcaatgtcta |
16070390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
411 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
449 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 45354962 - 45355440
Alignment:
| Q |
1 |
ttgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctact |
100 |
Q |
| |
|
||||||| ||||||| |||||| ||| ||| ||| |||| | |||| || ||||||||||||||||||||| |||||||| || |||| |||| |||| |
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|
| T |
45354962 |
ttgtttgggacaaaattttgctaaaatgtttgagataaactatgaaaatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtact |
45355061 |
T |
|
| Q |
101 |
cgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattgga |
200 |
Q |
| |
|
||||||||||||||| ||| ||| | |||||||| || | | ||| ||| | || ||||||||| | ||| | | |||||||| |||||||||| |
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|
| T |
45355062 |
cgaactgtaagcttt-aatttcttcaatatacatgcattgcaatattggtctaaa-tatgattgcattaacgtttctttgcgctttttcaacagattggg |
45355159 |
T |
|
| Q |
201 |
gcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttg |
300 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||| || |
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|
| T |
45355160 |
gtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcctgtgccttacaaagatgctg |
45355259 |
T |
|
| Q |
301 |
atactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctg |
400 |
Q |
| |
|
||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | ||||| |||| |||||||| |
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|
| T |
45355260 |
atactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgccagagacaactattctcctg |
45355358 |
T |
|
| Q |
401 |
aaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
482 |
Q |
| |
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| |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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|
| T |
45355359 |
gatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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