View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12677_low_10 (Length: 240)

Name: NF12677_low_10
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12677_low_10
NF12677_low_10
[»] chr1 (2 HSPs)
chr1 (18-118)||(37774987-37775087)
chr1 (188-233)||(37775157-37775202)
[»] chr4 (1 HSPs)
chr4 (18-111)||(8814533-8814626)
[»] chr2 (1 HSPs)
chr2 (41-109)||(16603134-16603202)
[»] chr3 (2 HSPs)
chr3 (41-111)||(43393700-43393770)
chr3 (41-92)||(23073111-23073162)
[»] chr6 (1 HSPs)
chr6 (41-111)||(18573293-18573363)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 37774987 - 37775087
Alignment:
Q  18 tttgatgccgcagttacagcattcgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatggtaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37774987 tttgatgccgcagttacagcattcgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatggtaatg 37775086  T
Q  118 g 118  Q
    |    
T  37775087 g 37775087  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 37775157 - 37775202
Alignment:
Q  188 ctagggtttcgaaggaagaagaagaagggattgaaacggataccct 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  37775157 ctagggtttcgaaggaagaagaagaagtgattgaaacggataccct 37775202  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 8814626 - 8814533
Alignment:
Q  18 tttgatgccgcagttacagcattcgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatg 111  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  8814626 tttgatgccacagttacaacatttgcctttgacgaaggggaagatgttgggaggggatttagagagaatgggttttgatgatggaagattcatg 8814533  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 16603202 - 16603134
Alignment:
Q  41 cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattca 109  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  16603202 cgcctttgacgaaggggaatatgttgggaggggattcagagagaatgggttctgattatggaagattca 16603134  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 43393700 - 43393770
Alignment:
Q  41 cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatg 111  Q
    ||||||||||||||||||| ||||||||||| |||||| || |||||||||||||| ||||||||||||||    
T  43393700 cgcctttgacgaaggggaatatgttgggaggggattcaaagggaatgggttttgattatggaagattcatg 43393770  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 23073111 - 23073162
Alignment:
Q  41 cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttt 92  Q
    ||||||||||||||||||| ||||||||||| |||||| || ||||||||||    
T  23073111 cgcctttgacgaaggggaatatgttgggaggggattcaaagggaatgggttt 23073162  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 18573363 - 18573293
Alignment:
Q  41 cgcctttgacgaaggggaagatgttgggaggagattcagagagaatgggttttgatgatggaagattcatg 111  Q
    ||||||||||||||||||| ||||||||||| |||||| || |||| ||||||||| ||||||||||||||    
T  18573363 cgcctttgacgaaggggaatatgttgggaggggattcaaagggaataggttttgattatggaagattcatg 18573293  T

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