View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12677_low_11 (Length: 229)

Name: NF12677_low_11
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12677_low_11
NF12677_low_11
[»] chr8 (16 HSPs)
chr8 (37-229)||(4736211-4736404)
chr8 (59-229)||(4680838-4681008)
chr8 (79-229)||(4725736-4725886)
chr8 (50-229)||(4745207-4745386)
chr8 (117-229)||(4702968-4703080)
chr8 (143-229)||(4890905-4890991)
chr8 (37-229)||(4688472-4688665)
chr8 (94-229)||(4714304-4714436)
chr8 (122-229)||(4995765-4995869)
chr8 (150-229)||(4904954-4905033)
chr8 (142-229)||(10446222-10446309)
chr8 (67-229)||(4913989-4914148)
chr8 (170-229)||(21440143-21440202)
chr8 (172-229)||(4777136-4777193)
chr8 (172-213)||(4875927-4875968)
chr8 (178-225)||(4925826-4925873)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 4736404 - 4736211
Alignment:
Q  37 tattaaagtaagcta----attattgtgctgctagctgactccatcgtacctgtactgtaagtttgtgaaggaacctacatcagatcgcttgaagaatga 132  Q
    |||||||||||||||    |||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||  |||||||    
T  4736404 tattaaagtaagctaattaattaatgtgctgctagctgacgccatcttacctgtactgtaagtttgtgatggaacctacatcagatcgtttccagaatga 4736305  T
Q  133 taatactgatgatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    ||| ||    || ||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  4736304 taacac---agaattagccgggtatgtgacataagctgtgttgttcaaagtcctcaattctataactgaaatgaatggagttccgtttcctgtgtta 4736211  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 4681008 - 4680838
Alignment:
Q  59 tgctgctagctgactccatcgtacctgtactgtaagtttgtgaaggaacctacatcagatcgcttgaagaatgataatactgatgatttagctgagtgtg 158  Q
    |||| ||||| ||||||||| |||||||| | ||||||||||| |||||||| |||| ||||   |||| |||||||||||||||||||||||| || ||    
T  4681008 tgctactagcagactccatcttacctgtattctaagtttgtgatggaacctaaatcaaatcgaaagaagtatgataatactgatgatttagctgcgtatg 4680909  T
Q  159 tgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    ||||||||||| |||| | ||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  4680908 tgacataagctttattatccaaagtcctcaattctatggctgaaatgaacggagtccctttgcctgtgtta 4680838  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 4725886 - 4725736
Alignment:
Q  79 gtacctgtactgtaagtttgtgaaggaacctacatcagatcgcttgaagaatgataatactgatgatttagctgagtgtgtgacataagctgtattgttc 178  Q
    ||||||||| ||||| ||||||| |||||||| |||| ||||   | | | |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  4725886 gtacctgtattgtaaatttgtgatggaacctatatcaaatcgaaaggaaagtgataatactgatgatttagctgagtgtgtgacataagttttattgttc 4725787  T
Q  179 aaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  4725786 aaagtcctcaattctatagctgaaatgaatggagtccctttgtctgtgtta 4725736  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 4745386 - 4745207
Alignment:
Q  50 taattattgtgctgctagctgactccatcgtacctgtactgtaagtttgtgaaggaacctacatcagatcgcttgaagaatgataatactgatgatttag 149  Q
    |||||| ||||||| |||  ||||||||| |||||||| ||||||||||||| |||||||| ||| |||||   | | | |||||||||||||||||||     
T  4745386 taattaatgtgctgatagaggactccatcttacctgtattgtaagtttgtgatggaacctatatccgatcgaaaggaaagtgataatactgatgatttat 4745287  T
Q  150 ctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||| | || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||   |||||||||||    
T  4745286 ctgagtatttgccataagctgtattgttcaaactcctcaattctatagctgaaatgaatggagtcctgctgcctgtgtta 4745207  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 4703080 - 4702968
Alignment:
Q  117 atcgcttgaagaatgataatactgatgatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccc 216  Q
    ||||| |||||| |||||||||   |||||||| ||| | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  4703080 atcgcctgaagagtgataatacaattgatttagatgaatatgtgacataagctttattgttcaaagtcctcaattcaataactgaaatgaatggagtccc 4702981  T
Q  217 tttgcctgtgtta 229  Q
    |||||||||||||    
T  4702980 tttgcctgtgtta 4702968  T

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Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 4890905 - 4890991
Alignment:
Q  143 gatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||    
T  4890905 gatttagctgagtatgtgacataagctgtattgttcaaaggcctcaattctatagctgaaatgaatggagtcccttttcctgtgtta 4890991  T

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Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 4688665 - 4688472
Alignment:
Q  37 tattaaagtaagctaattattgtgctgcta----gctgactccatcgtacctgtactgtaagtttgtgaaggaacctacatcagatcgcttgaagaatga 132  Q
    ||||||||| ||||||||| ||||||||||    ||  |||||||| |||||||| |  | |||||||| |||||||| |||| ||||   ||||  |||    
T  4688665 tattaaagttagctaattaatgtgctgctactaagcaaactccatcttacctgtattcaatgtttgtgatggaacctatatcaaatcgaaggaagtttga 4688566  T
Q  133 taatactgatgatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||||| |   |||| ||||| |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  4688565 taatactgtt---ttagttgagtttgtgacataagcagtattgttcaaagtcctcaattctatagatgaaatgaatggagtcccgttgcctgtgtta 4688472  T

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Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 4714436 - 4714304
Alignment:
Q  94 gtttgtgaaggaacctacatcagatcgcttgaagaatgataatactgatgatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattct 193  Q
    ||||| || ||||||||||||||||||  | |||  ||||| |||   |||||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  4714436 gtttgcgatggaacctacatcagatcgtctcaagggtgatactac---tgatttagctgagtttgtgacataaacttcattgttcaaagtcctcaattct 4714340  T
Q  194 ataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||||||||||||||||||||||| |||||||||    
T  4714339 ataactgaaatgaatggagtcccttttcctgtgtta 4714304  T

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Target: chr8; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 4995869 - 4995765
Alignment:
Q  122 ttgaagaatgataatactgatgatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgc 221  Q
    ||||||| |||||||||||||   |||| ||||| ||||| |||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||    
T  4995869 ttgaagagtgataatactgat---ttaggtgagtatgtgatataagctgtattgttcaaaggcctcaattcaatagcagaaatgaatggagtccctttgc 4995773  T
Q  222 ctgtgtta 229  Q
    ||||||||    
T  4995772 ctgtgtta 4995765  T

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Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 4904954 - 4905033
Alignment:
Q  150 ctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  4904954 ctgagtttgtgacataagctctattgttcaaaggcctcaattctatggctgaaatgaatggagtccctttgcctgtgtta 4905033  T

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Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 10446309 - 10446222
Alignment:
Q  142 tgatttagctgagtgtgtgacataagctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||||||||||||||||  |||||   |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  10446309 tgatttagctgagtgtgtggtataagtattattgttcaaagtcctcaattctatagctgaaatgaatggaatccctttgcctgtgtta 10446222  T

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Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 4913989 - 4914148
Alignment:
Q  67 gctgactccatcgtacctgtactgtaagtttgtgaaggaacctacatcagatcgcttgaagaatgataatactgatgatttagctgagtgtgtgacataa 166  Q
    ||||||| |||| |||||||| | |  |||||||| |||||||| |||| |||||||||| | |||||||||| |    | || ||||| ||||||||||    
T  4913989 gctgactacatcttacctgtattctctgtttgtgatggaacctaaatcacatcgcttgaaaagtgataatactaaa---tcaggtgagtatgtgacataa 4914085  T
Q  167 gctgtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
       | |||  |||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  4914086 ttagaatttgtcaaagtcctcaattctaaaactgaaatgaatggagtccctttgcctatgtta 4914148  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 21440143 - 21440202
Alignment:
Q  170 gtattgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    |||||||||| || ||||||||||||  ||||||||||||||||||||||||||||||||    
T  21440143 gtattgttcatagccctcaattctatggctgaaatgaatggagtccctttgcctgtgtta 21440202  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 4777136 - 4777193
Alignment:
Q  172 attgttcaaagtcctcaattctataactgaaatgaatggagtccctttgcctgtgtta 229  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||    
T  4777136 attgttcaaaggcctcaattctatagccgaaatgaatggagtcccttggcctgtgtta 4777193  T

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Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 4875927 - 4875968
Alignment:
Q  172 attgttcaaagtcctcaattctataactgaaatgaatggagt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4875927 attgttcaaagtcctcaattctataactgaaatgaatggagt 4875968  T

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Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 4925826 - 4925873
Alignment:
Q  178 caaagtcctcaattctataactgaaatgaatggagtccctttgcctgt 225  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||    
T  4925826 caaagtcctcaattctatagttgaaatgaatggagtccctttgcctgt 4925873  T

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