View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12677_low_12 (Length: 211)
Name: NF12677_low_12
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 2311056 - 2310876
Alignment:
| Q |
19 |
aatagaatgttacaaagttgatagatgcatcaacagaaaagttatatcatgattgatgaacctatctatgactataaggaagaataatcaacataaacag |
118 |
Q |
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| T |
2311056 |
aatagaatgttacaaagttgatagatgcatcaacagaaaagttatatcatgattgatgaacctatctatgactataaggaagaataattaacataaacag |
2310957 |
T |
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| Q |
119 |
agccattgctcataaattcttaaaatatttttcctccaagaatttcatctacaacagagtccacttctctattctctgctc |
199 |
Q |
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| T |
2310956 |
agccattgctcataaattcttaaaatatttttcctccaagaatttcatctacaacagagtccacttctctattctctgctc |
2310876 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 2928279 - 2928337
Alignment:
| Q |
90 |
ctataaggaagaataatcaacataaacagagccattgctcataaattcttaaaatattt |
148 |
Q |
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| T |
2928279 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
2928337 |
T |
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