View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12677_low_13 (Length: 205)
Name: NF12677_low_13
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 17693450 - 17693592
Alignment:
| Q |
32 |
cttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtg |
131 |
Q |
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| T |
17693450 |
cttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtg |
17693549 |
T |
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| Q |
132 |
ccatcactttgtggcaacttcttaccctttttcctcaattctct |
175 |
Q |
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| T |
17693550 |
tcatcac-ttgtggcaacttcagaccctttttcctcaattctct |
17693592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 17613706 - 17613862
Alignment:
| Q |
18 |
ctatgtatgtactacttgaggaaaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaatt |
117 |
Q |
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| T |
17613706 |
ctatgtatgtac--cttgaggaaagattcacttgttgtgatatatattttgaagccatgttgaatgtttgtaaattagaagatgcccaggttggccaatt |
17613803 |
T |
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| Q |
118 |
agaagaaaaatgtgccatcactttgtggcaacttcttaccc-tttttcctcaattctctc |
176 |
Q |
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| T |
17613804 |
agaagaaaaatgtgtcatcac-ttgtggcaacttctgacccttttttcctcaattctctc |
17613862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 17671327 - 17671422
Alignment:
| Q |
81 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcactttgtggcaacttcttaccc-tttttcctcaattctctc |
176 |
Q |
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| T |
17671327 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcac-ttgtggcaacttctgacccttttttcctcaattctctc |
17671422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 17657819 - 17657914
Alignment:
| Q |
81 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcactttgtggcaacttcttaccct-ttttcctcaattctctc |
176 |
Q |
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| T |
17657819 |
atgtttgtaaattagaagatgctcaggtttgcaaattagaagaaaaatgtgtcatcac-ttgtggcaacttctgaccctattttcctcaattctctc |
17657914 |
T |
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