View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12677_low_2 (Length: 464)
Name: NF12677_low_2
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 52583930 - 52583650
Alignment:
| Q |
18 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttc-----ctgattttatgttcactagtactaataaagaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52583930 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaa |
52583831 |
T |
|
| Q |
113 |
attgcatcatacttgagtagtattcgaat------------taagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583830 |
attgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
52583731 |
T |
|
| Q |
201 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583730 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttatagacatggtataagctatttctat |
52583650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 288 - 450
Target Start/End: Complemental strand, 52583443 - 52583281
Alignment:
| Q |
288 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
52583344 |
T |
|
| Q |
388 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583343 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatg |
52583281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
190 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
254 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
155 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
155 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
197 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
162 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University