View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12677_low_3 (Length: 356)

Name: NF12677_low_3
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12677_low_3
NF12677_low_3
[»] chr4 (23 HSPs)
chr4 (129-337)||(26435800-26436008)
chr4 (129-337)||(26832731-26832939)
chr4 (129-337)||(26434020-26434228)
chr4 (134-336)||(23408615-23408817)
chr4 (131-336)||(24307221-24307426)
chr4 (131-336)||(23885825-23886030)
chr4 (134-336)||(23402075-23402277)
chr4 (131-336)||(23415784-23415989)
chr4 (131-336)||(23868730-23868935)
chr4 (134-336)||(23453447-23453649)
chr4 (129-336)||(34662116-34662323)
chr4 (2-99)||(26433893-26433990)
chr4 (2-99)||(26435673-26435770)
chr4 (2-99)||(26832604-26832701)
chr4 (1-99)||(23868600-23868698)
chr4 (5-99)||(23885699-23885793)
chr4 (2-94)||(34662358-34662450)
chr4 (5-90)||(23401946-23402031)
chr4 (5-90)||(23408861-23408946)
chr4 (1-90)||(24307091-24307180)
chr4 (5-99)||(23416018-23416112)
chr4 (223-337)||(23451806-23451920)
chr4 (5-87)||(23453696-23453778)
[»] chr1 (4 HSPs)
chr1 (129-303)||(41670396-41670570)
chr1 (129-288)||(40795765-40795924)
chr1 (129-264)||(29391462-29391597)
chr1 (284-336)||(33216596-33216648)
[»] chr7 (2 HSPs)
chr7 (129-315)||(40180366-40180552)
chr7 (284-315)||(47317433-47317464)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 129 - 337
Target Start/End: Original strand, 26435800 - 26436008
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26435800 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26435899  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 328  Q
    |||||||||||||||||||||  |||| |||||||| || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26435900 caatgatatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 26435999  T
Q  329 cttgttctg 337  Q
    |||||||||    
T  26436000 cttgttctg 26436008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 129 - 337
Target Start/End: Original strand, 26832731 - 26832939
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26832731 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26832830  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 328  Q
    ||||||||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26832831 caatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 26832930  T
Q  329 cttgttctg 337  Q
    |||||||||    
T  26832931 cttgttctg 26832939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 129 - 337
Target Start/End: Original strand, 26434020 - 26434228
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26434020 gcgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcat 26434119  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 328  Q
    ||||||||||||||||||||| ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26434120 caatgatatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 26434219  T
Q  329 cttgttctg 337  Q
    |||||||||    
T  26434220 cttgttctg 26434228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 23408817 - 23408615
Alignment:
Q  134 gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23408817 gaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatcaatg 23408718  T
Q  234 atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 333  Q
    ||||||||||||| || ||||| ||||| || || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23408717 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagacttgt 23408618  T
Q  334 tct 336  Q
    |||    
T  23408617 tct 23408615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 131 - 336
Target Start/End: Original strand, 24307221 - 24307426
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  24307221 gttgaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 24307320  T
Q  231 atgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggct 330  Q
    ||||||||||||||||||||||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||    
T  24307321 atgatatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagact 24307420  T
Q  331 tgttct 336  Q
    ||||||    
T  24307421 tgttct 24307426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 131 - 336
Target Start/End: Original strand, 23885825 - 23886030
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23885825 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca 23885924  T
Q  231 atgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggct 330  Q
    |||||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||||||    
T  23885925 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggct 23886024  T
Q  331 tgttct 336  Q
    ||||||    
T  23886025 tgttct 23886030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 134 - 336
Target Start/End: Original strand, 23402075 - 23402277
Alignment:
Q  134 gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23402075 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23402174  T
Q  234 atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 333  Q
    ||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||    
T  23402175 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23402274  T
Q  334 tct 336  Q
    |||    
T  23402275 tct 23402277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 336
Target Start/End: Complemental strand, 23415989 - 23415784
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  23415989 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatca 23415890  T
Q  231 atgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggct 330  Q
    |||||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||    
T  23415889 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 23415790  T
Q  331 tgttct 336  Q
    ||||||    
T  23415789 tgttct 23415784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 336
Target Start/End: Original strand, 23868730 - 23868935
Alignment:
Q  131 gttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatca 230  Q
    ||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  23868730 gttgaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 23868829  T
Q  231 atgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggct 330  Q
    ||||||||||||||||||| ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||    
T  23868830 atgatatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagact 23868929  T
Q  331 tgttct 336  Q
    ||||||    
T  23868930 tgttct 23868935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 134 - 336
Target Start/End: Complemental strand, 23453649 - 23453447
Alignment:
Q  134 gaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 233  Q
    |||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23453649 gaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23453550  T
Q  234 atatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 333  Q
    ||||||||||||| || ||||| ||||| || || || ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  23453549 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtcttgt 23453450  T
Q  334 tct 336  Q
    |||    
T  23453449 tct 23453447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 129 - 336
Target Start/End: Complemental strand, 34662323 - 34662116
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  34662323 gcgttgaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcat 34662224  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcggtcagg 328  Q
    |||||||||||||||||| || ||||| |||||||| || || || ||||| || |||||||| || || ||||| |||||||||||||| || || |||    
T  34662223 caatgatatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttagg 34662124  T
Q  329 cttgttct 336  Q
    ||||||||    
T  34662123 cttgttct 34662116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26433893 - 26433990
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26433893 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26433990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26435673 - 26435770
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26435673 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 26832604 - 26832701
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26832604 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 26832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23868600 - 23868698
Alignment:
Q  1 cgcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  23868600 cgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg 23868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 23885699 - 23885793
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  23885699 gaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggttcagccgccgg 23885793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 34662450 - 34662358
Alignment:
Q  2 gcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagcc 94  Q
    |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  34662450 gcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggttcagcc 34662358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 23401946 - 23402031
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  23401946 gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 23402031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 23408946 - 23408861
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  23408946 gaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggttc 23408861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24307091 - 24307180
Alignment:
Q  1 cgcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttc 90  Q
    ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  24307091 cgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggttc 24307180  T

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Target: chr4; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 23416112 - 23416018
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtggttcagccgccgg 99  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||    
T  23416112 gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggttcagctgccgg 23416018  T

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Target: chr4; HSP #22
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 337
Target Start/End: Complemental strand, 23451920 - 23451806
Alignment:
Q  223 tttcatcaatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattcagaccgcg 322  Q
    ||||||||| |||||||| ||||| || ||||| ||||  || || || ||| | ||||| ||||||||||||||||||||||||||||||||||||||     
T  23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
Q  323 gtcaggcttgttctg 337  Q
    |||||||||||||||    
T  23451820 gtcaggcttgttctg 23451806  T

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Target: chr4; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 23453778 - 23453696
Alignment:
Q  5 gaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggtgg 87  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||    
T  23453778 gaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg 23453696  T

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Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 129 - 303
Target Start/End: Original strand, 41670396 - 41670570
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| ||||||||||||||||||||||| || || || ||||| || || ||||||||||||||||| || ||||| ||||||||||| |||||    
T  41670396 gcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcat 41670495  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttc 303  Q
    |||||||||||| ||||| || |||||||||||||| || || || |||||||| |||||||| |||||||||||    
T  41670496 caatgatatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttc 41670570  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 129 - 288
Target Start/End: Original strand, 40795765 - 40795924
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||| ||||| ||||||||||||||||||||||| || || || ||||| || || ||||| ||||| ||||| || ||||| |||||||||||||||||    
T  40795765 gcgtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcat 40795864  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaa 288  Q
    |||||| ||||| ||||| || ||||||||||| || || |||||| | ||||| |||||    
T  40795865 caatgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaa 40795924  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 264
Target Start/End: Original strand, 29391462 - 29391597
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| || ||||| |||||||||||||| || ||||| ||||| || ||||| ||||| ||   |||||| ||||| || ||||||||||||||    
T  29391462 gcgttgaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcat 29391561  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttc 264  Q
    |||||||||||| |||||||| ||||||||| ||||    
T  29391562 caatgatatctttgagaaactcgctcaggaagcttc 29391597  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 33216596 - 33216648
Alignment:
Q  284 aagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgttct 336  Q
    |||||||||||||||||||||||| ||||||| || || ||||| ||||||||    
T  33216596 aagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttct 33216648  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 315
Target Start/End: Complemental strand, 40180552 - 40180366
Alignment:
Q  129 gcgttgaaacatacaagatctacatcttcaaggtcctgaaacaagttcacccagatattggtatctcaagcaaagccatgggtatcatgaacagtttcat 228  Q
    |||||||||| |||||||| |||||||||||||| |||||||| ||||| || ||||| ||| | |||||||| || ||||| |||||||||||||||||    
T  40180552 gcgttgaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcat 40180453  T
Q  229 caatgatatcttcgagaaactagctcaggaatcttcaaggctcgctaggtacaataagaagccaacaatcacttcaagggaaattca 315  Q
     || |||||||| |||||||| ||||||||||| ||  |  | |||||||| || |||||||| || || ||||| ||||| |||||    
T  40180452 taacgatatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattca 40180366  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 47317433 - 47317464
Alignment:
Q  284 aagaagccaacaatcacttcaagggaaattca 315  Q
    ||||||||||||||||||||||||||||||||    
T  47317433 aagaagccaacaatcacttcaagggaaattca 47317464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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