View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12677_low_6 (Length: 293)

Name: NF12677_low_6
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12677_low_6
NF12677_low_6
[»] chr1 (1 HSPs)
chr1 (1-281)||(46867558-46867838)
[»] chr6 (2 HSPs)
chr6 (1-32)||(31410585-31410616)
chr6 (1-35)||(18071619-18071653)
[»] chr5 (1 HSPs)
chr5 (1-32)||(3712020-3712051)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-35)||(15850-15884)
[»] chr7 (1 HSPs)
chr7 (2-32)||(26944115-26944145)
[»] chr4 (2 HSPs)
chr4 (1-35)||(12504593-12504627)
chr4 (1-35)||(25175080-25175114)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 46867838 - 46867558
Alignment:
Q  1 attaaattgtgtgagctctaaccattagactatttnnnnnnnntaaagagttgagactaatcaaatgctgacttttcgagaattgattaaggatataaaa 100  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46867838 attaaattgtgtgagctctaaccattagactatttgaaaaaaataaagagttgagactaatcaaatgctgacttt-cgagaattgattaaggatataaaa 46867740  T
Q  101 ttggaaagtatgcataaaaaatattgcagaaattaattaatttagtag-nnnnnnnnnnggaagaataattaatttagtagtatgactcccnnnnnnnnn 199  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| ||           ||||||||||||||||||||||||||||||||             
T  46867739 ttggaaagtatgcataaaaaatatttcggaaattaattaatttagaagtttttttttttggaagaataattaatttagtagtatgactcccaaaaaaata 46867640  T
Q  200 nnnnnnnnnntactattattagacgattgtttaatctccatgatgatctttaacccgccaaagtctcccctcccatttttct 281  Q
              ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  46867639 aaatcaaaaatactattattagacgattgtttaatctccatgatgatttttaacccgccaaagtcccccctcccatttttct 46867558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31410585 - 31410616
Alignment:
Q  1 attaaattgtgtgagctctaaccattagacta 32  Q
    ||||||||||||||||||||||||||||||||    
T  31410585 attaaattgtgtgagctctaaccattagacta 31410616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18071619 - 18071653
Alignment:
Q  1 attaaattgtgtgagctctaaccattagactattt 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  18071619 attaaattgtgtgagctctagccattagactattt 18071653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3712051 - 3712020
Alignment:
Q  1 attaaattgtgtgagctctaaccattagacta 32  Q
    ||||||||||||||||||||||||||||||||    
T  3712051 attaaattgtgtgagctctaaccattagacta 3712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15850 - 15884
Alignment:
Q  1 attaaattgtgtgagctctaaccattagactattt 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  15850 attaaattgtgtgagctctagccattagactattt 15884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 26944145 - 26944115
Alignment:
Q  2 ttaaattgtgtgagctctaaccattagacta 32  Q
    |||||||||||||||||||||||||||||||    
T  26944145 ttaaattgtgtgagctctaaccattagacta 26944115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12504627 - 12504593
Alignment:
Q  1 attaaattgtgtgagctctaaccattagactattt 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  12504627 attaaattgtgtgagctctagccattagactattt 12504593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25175114 - 25175080
Alignment:
Q  1 attaaattgtgtgagctctaaccattagactattt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  25175114 attaaattgtgtgagctctaaccactagactattt 25175080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University