View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12677_low_9 (Length: 246)
Name: NF12677_low_9
Description: NF12677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12677_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 11646453 - 11646384
Alignment:
| Q |
164 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagacgatgtttattcaaattcagtg |
233 |
Q |
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| T |
11646453 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagactatgtttattcaaattcagtg |
11646384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11591138 - 11591206
Alignment:
| Q |
1 |
ctcttccttcttctttctctattttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
69 |
Q |
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| T |
11591138 |
ctcttccttcttctttctctattttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11591206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11646529 - 11646461
Alignment:
| Q |
1 |
ctcttccttcttctttctctattttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11646529 |
ctcttccttcttctttctctattttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11646461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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