View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12678_high_1 (Length: 566)
Name: NF12678_high_1
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12678_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 193 - 551
Target Start/End: Complemental strand, 13140586 - 13140218
Alignment:
| Q |
193 |
aaaattcagttatctaaaatattgatagtgatcttgaacatgatcat------aagagacggttagagcgggtgctatgaaattgatgtggtggttgacg |
286 |
Q |
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| T |
13140586 |
aaaattcagttatctaaaatattgatagtgatcttgaacatgatcatgatcataagagacagttggagcgggtgctatgaaattgatgtggtggttgacg |
13140487 |
T |
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| Q |
287 |
gtggttcttgactagtggagagtggtgctcgtacaaagatacttcaatttccaagctacttagacctcaatgtgttttgatgnnnnnnncaaaatgagaa |
386 |
Q |
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| T |
13140486 |
gtggttcttcactagtgcagagtggtgttcgtacaaagatacttcaatttccaagctactgagacctcaatgtgttttaatgtttttttcaaaatgagaa |
13140387 |
T |
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| Q |
387 |
tatgtacttgattttacagttgtttgctctatttgtagatttttagatggacgataaatatgggcattttgacga----atttactcaaagtttgggaag |
482 |
Q |
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| T |
13140386 |
tatgtacttgatttgatagttgtttgctctatttgtagatttttagatggacgataaatatgggcattttgacgaaagcatttactcaaagttcgggaag |
13140287 |
T |
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| Q |
483 |
gagataagcgaataatttgatttaaggcgggannnnnnnncatttggtagaaattttggcagctcatgc |
551 |
Q |
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| T |
13140286 |
gagataagcgaataatttgatttaaggagggattttttttcatttggtagaaattttggcagctcatgc |
13140218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13140777 - 13140693
Alignment:
| Q |
1 |
gttttactttgtaccccctcacttacttagtacaccttaccttacaactaaaggtatagtgaaaatctaattttatccttaatca |
85 |
Q |
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| T |
13140777 |
gttttactttgtaccccctcacttacttagtacaccttaccttacaactaaaggtatggtgaaaatctaattttatccttaatca |
13140693 |
T |
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