View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12678_high_2 (Length: 526)
Name: NF12678_high_2
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12678_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 36510028 - 36510349
Alignment:
| Q |
19 |
catgttgcattttgtgattgcattattgttggtgtaaatcttgacaaagttttatgagttggatgcatcaaagtgtgtgccacaaatttagcttgagggt |
118 |
Q |
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| T |
36510028 |
catgttgcattttgtgattgcattattgttggtgtgaatcttgacaaagttttatgagttggatacatcaaagtgtgtgccacaaatttggcttgagggt |
36510127 |
T |
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| Q |
119 |
ggccatgaaatgttgatgaccagtcattaagatattgggcgcagaactgtcctacattgtcaagacagtcttctccttctatgctcaattgagaagcttc |
218 |
Q |
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| T |
36510128 |
ggccatgaaatgttgatgaccagtcattaagatattggccgcagaactgtcctacattgtcaagacagtcttctccttctatgctcaattgagaagcttc |
36510227 |
T |
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| Q |
219 |
aaacaatgcaatcattccatttatatcctcagaaaatgtatgcttgagtttgcctttgttgtcacagaacttatcaaatatgtctgtaagatgcagcaaa |
318 |
Q |
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| T |
36510228 |
aaacaatgcaatcattccatttatatcctcagaaaatgtatacttgagtttgcctttgttgtcacaaaacttatcaaatatgtctgtaagatgcagcaaa |
36510327 |
T |
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| Q |
319 |
aaacattgtcatgttcatgtag |
340 |
Q |
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| T |
36510328 |
aaacatggtcatgttcatgtag |
36510349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 388 - 515
Target Start/End: Original strand, 36510365 - 36510492
Alignment:
| Q |
388 |
atttgttccacaataaaagtcacatttgcaaaagaaattatcacaaaacaaacctgggctaatgtaatacccttcttgtctcaacatacgaaattgaaat |
487 |
Q |
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| T |
36510365 |
atttgttccacaataaaagtcacatttgcaaaagaaattatcacaaaacaaacctgggctaatgtaatacccttcttgtctcaacatacgaaattgaaat |
36510464 |
T |
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| Q |
488 |
gcagcttgtgacagtccttgatattcat |
515 |
Q |
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| T |
36510465 |
gcagcttgtgacagtccttgatattcat |
36510492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 446 - 512
Target Start/End: Complemental strand, 37343140 - 37343074
Alignment:
| Q |
446 |
ctaatgtaatacccttcttgtctcaacatacgaaattgaaatgcagcttgtgacagtccttgatatt |
512 |
Q |
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| T |
37343140 |
ctaatgtaataccttttttgtcttaacatacgaaattgaaatgcaacttgtgacagtccttcatatt |
37343074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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