View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12678_high_3 (Length: 435)

Name: NF12678_high_3
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12678_high_3
NF12678_high_3
[»] chr4 (2 HSPs)
chr4 (160-427)||(18979144-18979416)
chr4 (189-256)||(26370376-26370443)
[»] chr2 (2 HSPs)
chr2 (182-265)||(33797789-33797872)
chr2 (187-261)||(3324029-3324103)
[»] chr7 (1 HSPs)
chr7 (189-262)||(48817927-48818000)
[»] chr5 (1 HSPs)
chr5 (189-263)||(7683372-7683446)
[»] chr3 (2 HSPs)
chr3 (187-256)||(54548768-54548837)
chr3 (194-256)||(37972418-37972480)
[»] chr1 (2 HSPs)
chr1 (188-256)||(12390109-12390176)
chr1 (176-263)||(12555694-12555781)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 160 - 427
Target Start/End: Complemental strand, 18979416 - 18979144
Alignment:
Q  160 cttttgaaaatgaattaaaataaaaataaa-----ggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccat 254  Q
    ||||||||||||||||||||  ||||||||     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18979416 cttttgaaaatgaattaaaaataaaataaaacaaaggttccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccat 18979317  T
Q  255 ggaaccattttattaccatttaccgacttaaactatctaaactaaaacaaacatatagttattgtttgtctttgaatannnnnnnnggattagacataaa 354  Q
    |||||| |||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||    
T  18979316 ggaaccgttttgtatacatttaccgacttaaactatctaaactaaaacaaacatatagttattgtttgtctttcaatatattttttggattagacataaa 18979217  T
Q  355 aatgtatctaagataaacatgatgaattgaacaggttatggctgatctgttggcaccttggactgttcatctc 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18979216 aatgtatctaagataaacatgatgaattgaacaggttatggctgatctgttggcaccttggactgttcatctc 18979144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 26370443 - 26370376
Alignment:
Q  189 aggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 256  Q
    |||| ||||||||| ||||| |||||||||  |||||||||||  |||||||||||||||||||||||    
T  26370443 aggtcccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgg 26370376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 33797789 - 33797872
Alignment:
Q  182 aaaataaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccatttt 265  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33797789 aaaaaaaaggttccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccgtttt 33797872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 3324103 - 3324029
Alignment:
Q  187 aaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacca 261  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3324103 aaaggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgggacca 3324029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 48818000 - 48817927
Alignment:
Q  189 aggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccat 262  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48818000 aggttccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccat 48817927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 7683446 - 7683372
Alignment:
Q  189 aggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccatt 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7683446 aggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgggaccatt 7683372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 54548837 - 54548768
Alignment:
Q  187 aaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 256  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54548837 aaaggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 54548768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 37972480 - 37972418
Alignment:
Q  194 ccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 256  Q
    ||||||||| ||||| |||||||||  |||||||||||  |||||||||||||||||||||||    
T  37972480 ccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgg 37972418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 12390176 - 12390109
Alignment:
Q  188 aaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 256  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12390176 aaggtcccaccgagacttgaactcgg-ttactggattcagagtccaatgtcctaaccgctagaccatgg 12390109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 12555781 - 12555694
Alignment:
Q  176 aaaataaaaataaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccatt 263  Q
    |||||||||| |||||| ||||||||| ||||| |||||||||  |||||||||||  ||||||||||||||||||||||| ||||||    
T  12555781 aaaataaaaaaaaaggtcccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgggaccatt 12555694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University