View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12678_high_5 (Length: 339)
Name: NF12678_high_5
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12678_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 43774453 - 43774617
Alignment:
| Q |
11 |
ataccgaagatttgagatcctaaactaatgtcttattagtaatttcatttatggagatcttgagacttgctgtctttgtattccattttgtcatggatta |
110 |
Q |
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| T |
43774453 |
ataccgaagatttgagatcctaaaataatgtcttattagtaatttaatttatggagatcttgagtcttgctgtctttgttttccattttgtcatggatta |
43774552 |
T |
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| Q |
111 |
ttgtcttgctatc------atactaacccaatcttgtctaacttcctcgtgaatatgctcgcaaa |
169 |
Q |
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| T |
43774553 |
ttgtcttgttatcatagtaatactaacccagtcttgtcttacttcctcgtgaacatgctcgcaaa |
43774617 |
T |
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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 170 - 327
Target Start/End: Original strand, 43774766 - 43774931
Alignment:
| Q |
170 |
agtttggtaagaatgacatgacactgctcaattagcatagcgttattgatgttgtttttcccctgtggcttgccaccatgtctgtatgtgatatatca-- |
267 |
Q |
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| T |
43774766 |
agtttggtaacaatgacatggcactgcccaattagcacagctttattaatgttgtttttccc--gtgtcttgctaccatgtctgtatgtaatatatcatt |
43774863 |
T |
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| Q |
268 |
--------ttggactttatactttatattcttcaattttgataacttgatctcatgtccaaacatctg |
327 |
Q |
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| T |
43774864 |
ggttggagttggactttatactttatatccttcaattttgataacatgatctcatgtccgaacatctg |
43774931 |
T |
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