View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12678_high_7 (Length: 244)

Name: NF12678_high_7
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12678_high_7
NF12678_high_7
[»] chr3 (5 HSPs)
chr3 (1-230)||(28230706-28230935)
chr3 (26-139)||(4559267-4559380)
chr3 (51-133)||(30406140-30406222)
chr3 (92-162)||(3440456-3440526)
chr3 (43-109)||(7957942-7958008)
[»] chr7 (4 HSPs)
chr7 (30-139)||(3743938-3744046)
chr7 (95-139)||(21839377-21839421)
chr7 (76-128)||(34793131-34793183)
chr7 (64-128)||(39882511-39882576)
[»] scaffold0128 (1 HSPs)
scaffold0128 (50-134)||(42176-42260)
[»] chr5 (6 HSPs)
chr5 (54-162)||(23409713-23409821)
chr5 (65-152)||(23878681-23878768)
chr5 (87-137)||(9190185-9190235)
chr5 (60-137)||(35415309-35415386)
chr5 (87-155)||(19847935-19848003)
chr5 (36-130)||(4632733-4632827)
[»] chr2 (6 HSPs)
chr2 (16-145)||(9547671-9547801)
chr2 (86-152)||(20681540-20681606)
chr2 (31-156)||(32991919-32992045)
chr2 (64-133)||(43657814-43657883)
chr2 (40-139)||(12808603-12808702)
chr2 (41-143)||(16316220-16316322)
[»] chr1 (5 HSPs)
chr1 (54-152)||(25268762-25268860)
chr1 (36-134)||(1073176-1073274)
chr1 (89-149)||(32794298-32794358)
chr1 (50-132)||(33261153-33261235)
chr1 (50-132)||(33281312-33281394)
[»] chr4 (4 HSPs)
chr4 (77-139)||(41996614-41996676)
chr4 (76-124)||(12716137-12716185)
chr4 (26-96)||(7320682-7320752)
chr4 (93-139)||(25708257-25708303)
[»] chr8 (2 HSPs)
chr8 (40-143)||(24997153-24997256)
chr8 (62-115)||(11217675-11217728)
[»] chr6 (4 HSPs)
chr6 (57-139)||(14361850-14361932)
chr6 (92-134)||(24954609-24954651)
chr6 (51-130)||(17111765-17111844)
chr6 (107-139)||(15107248-15107280)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-130)||(460315-460405)
[»] scaffold0792 (1 HSPs)
scaffold0792 (36-134)||(1512-1609)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28230706 - 28230935
Alignment:
Q  1 atatacaacaaacgatcaataaaaagaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28230706 atatacaacaaacgatcaataaaaagaagcacaaattaaccaatacccacacataaaaaaggtttttgacacccgttatgaaaactataatgaaaaacaa 28230805  T
Q  101 caaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaagaattaaaataacccaactaattgtaatttttcatagaaa 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28230806 taaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaagaattaaaataacccaactaattgtaatttttcatagaaa 28230905  T
Q  201 agaaaaaactattttggaacaaaataaagt 230  Q
    ||||||||||||||||||||||||||||||    
T  28230906 agaaaaaactattttggaacaaaataaagt 28230935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 4559380 - 4559267
Alignment:
Q  26 gaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaa 125  Q
    |||||| |||||| |||||||||||| || ||||  | |||| ||| |  |||||||| ||||||||||||||||||||||||||||||||| | |||||    
T  4559380 gaagcataaattagccaatacccacatatgaaaataggttttagcatcaattatgaaagctataatgaaaaacaacaaatttagctttaaactatcaaaa 4559281  T
Q  126 ggaaagaagcttaa 139  Q
    |||||||| |||||    
T  4559280 ggaaagaaacttaa 4559267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 30406140 - 30406222
Alignment:
Q  51 acataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaa 133  Q
    |||| ||||||| || |||||||  | ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30406140 acatgaaaaagggttctggcaccaatcatgaaacttataatgaaaaacaacaaatttagctttaaaccactaaaaggaaagaa 30406222  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 3440526 - 3440456
Alignment:
Q  92 gaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttgaacaaga 162  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||| ||| | |||||| |||| ||||    
T  3440526 gaaaaacaacaaatttagcttttaactaccaaaaggaaagaagtttaatattctccaaaagctgaagaaga 3440456  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 7958008 - 7957942
Alignment:
Q  43 atacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttag 109  Q
    |||||||| || | ||| || ||||||||||  |||| |||||||| ||||||||||||||||||||    
T  7958008 atacccacgcacacaaatgggttttggcaccaattataaaaactatgatgaaaaacaacaaatttag 7957942  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 3744046 - 3743938
Alignment:
Q  30 cacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaa 129  Q
    ||||||||| ||||||||| |||||||||| |||||| ||||||  |||||||| |||||||| |||||||||||||||| ||||||||| |||||| ||    
T  3744046 cacaaattagccaatacccgcacataaaaagggtttt-ggcaccaattatgaaagctataatgtaaaacaacaaatttagttttaaaccatcaaaagaaa 3743948  T
Q  130 agaagcttaa 139  Q
    ||||||||||    
T  3743947 agaagcttaa 3743938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 21839377 - 21839421
Alignment:
Q  95 aaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  21839377 aaacaactaatttagctttaaaccagcaaaaggaaagaagtttaa 21839421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 34793183 - 34793131
Alignment:
Q  76 ttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaagga 128  Q
    |||||||||| |||| |||| |||  |||||||||||||||||||||||||||    
T  34793183 ttatgaaaacaataacgaaatacataaaatttagctttaaaccaccaaaagga 34793131  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 39882511 - 39882576
Alignment:
Q  64 ttttggcacccgttatgaaaactataatgaaaaaca-acaaatttagctttaaaccaccaaaagga 128  Q
    |||||||||| || |||||| ||||||||||||| | ||||  | |||||||||||||||||||||    
T  39882511 ttttggcaccagtgatgaaagctataatgaaaaaaatacaacatgagctttaaaccaccaaaagga 39882576  T

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Target: scaffold0128 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 42260 - 42176
Alignment:
Q  50 cacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 134  Q
    ||||||||||||| ||||||||||  |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42260 cacataaaaaaggattttggcaccgattataaaaagtataatgaaaaacaacaaatttagctttaaactaccaaaaggaaagaag 42176  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 23409821 - 23409713
Alignment:
Q  54 taaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagt 153  Q
    ||||||| | ||||| ||||  |||||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||     
T  23409821 taaaaaaagattttgccaccaattatgaaagctacaatgaaaaacaacaaatttaattttaaaccaccaaaaggaaagaagcttaacattctccaaaagc 23409722  T
Q  154 tgaacaaga 162  Q
    |||||||||    
T  23409721 tgaacaaga 23409713  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 23878768 - 23878681
Alignment:
Q  65 tttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 152  Q
    |||||||||  || ||||| ||||||||||||  |||||||||||| ||||||||| | ||||| |||||||||||||| | ||||||    
T  23878768 tttggcaccaattgtgaaagctataatgaaaattaacaaatttagccttaaaccactagaaggagagaagcttaacattctccaaaag 23878681  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 9190235 - 9190185
Alignment:
Q  87 ataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagctt 137  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  9190235 ataattaaaaacaacaaatttagctttgaaccaccaaaagaaaagaagctt 9190185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 35415386 - 35415309
Alignment:
Q  60 aggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagctt 137  Q
    ||||||| ||||||  ||||||||   ||||| ||| |||||||| ||||||||||||||| |||||||||| |||||    
T  35415386 aggttttaggcaccatttatgaaacgaataattaaagacaacaaaattagctttaaaccacaaaaaggaaaggagctt 35415309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 19848003 - 19847935
Alignment:
Q  87 ataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaagttg 155  Q
    |||||||||||||||||| ||||||||| ||||  | ||||||||||| |||| | | |||||||||||    
T  19848003 ataatgaaaaacaacaaaattagctttataccatgagaaggaaagaagtttaatactcttcaaaagttg 19847935  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 4632827 - 4632733
Alignment:
Q  36 ttaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaa 130  Q
    ||||||||| |||| ||| | |||||| || |||||||  | |||||| | |||||||||| ||| | | | |||||||||||||||||||||||    
T  4632827 ttaaccaatccccagacaaagaaaagggttatggcaccaatcatgaaagcgataatgaaaagcaatagaatgagctttaaaccaccaaaaggaaa 4632733  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 9547671 - 9547801
Alignment:
Q  16 tcaataaaaagaagcacaaattaaccaatacccacacataaaaaag-gtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagcttta 114  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||  | |||||||||   |||||||| || |||||||| || ||||| ||||| |||    
T  9547671 tcaacaaaaagaagcacaaattagccaatacccgcacataaaaaaaaggttttggcacaaattatgaaagctttaatgaaacactacaaacttagcctta 9547770  T
Q  115 aaccaccaaaaggaaagaagcttaacatttt 145  Q
    |||||||||||| |||||||||| |||||||    
T  9547771 aaccaccaaaagaaaagaagcttcacatttt 9547801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 20681540 - 20681606
Alignment:
Q  86 tataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 152  Q
    |||||||||||  |||||| | ||||||||||||||||||| |||||||||| | ||||| ||||||    
T  20681540 tataatgaaaagtaacaaaatgagctttaaaccaccaaaagaaaagaagcttgatattttccaaaag 20681606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 32992045 - 32991919
Alignment:
Q  31 acaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaaca-acaaatttagctttaaaccaccaaaaggaa 129  Q
    ||||||||  |||||||| ||||||| || |  ||||||||||  |||| ||| |||| || ||||| | ||| ||||||||||||||||||| |||||     
T  32992045 acaaattagtcaatacccgcacataagaatgagttttggcaccaattataaaagctatgataaaaaaaatacagatttagctttaaaccaccataaggat 32991946  T
Q  130 agaagcttaacatttttcaaaagttga 156  Q
    ||||  |||||||||| ||| ||||||    
T  32991945 agaattttaacattttacaatagttga 32991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 43657883 - 43657814
Alignment:
Q  64 ttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaa 133  Q
    ||||||||||  ||||||||   || || |||||||||||||||| ||||||||||||||||| ||||||    
T  43657883 ttttggcaccaattatgaaacaaatcattaaaaacaacaaatttaactttaaaccaccaaaagaaaagaa 43657814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 12808702 - 12808603
Alignment:
Q  40 ccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    ||||||||| ||||||| || || |||||||| |  |||||||| ||| ||| |||    ||| ||||||||||||||||||| ||||||||||| ||||    
T  12808702 ccaatacccgcacataagaatgggttttggcatcaattatgaaagctaaaataaaagtttacatatttagctttaaaccaccagaaggaaagaagtttaa 12808603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 16316322 - 16316220
Alignment:
Q  41 caatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaac 140  Q
    ||||| |||||||||| || || ||||| ||||  |||||||| ||||||| |||    ||| || |||||||||||||||| ||||| ||||| |||||    
T  16316322 caatagccacacataagaatgggttttgacaccaattatgaaagctataataaaagtttacagatgtagctttaaaccaccagaaggagagaagtttaac 16316223  T
Q  141 att 143  Q
    |||    
T  16316222 att 16316220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 25268860 - 25268762
Alignment:
Q  54 taaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaaaag 152  Q
    ||||||||| ||||||||||  ||||||||  |||||  ||||| ||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||    
T  25268860 taaaaaaggattttggcaccaattatgaaacttataagaaaaaataacaaatttagctttaaaccaccaaaatgaaagaagcttaatattctccaaaag 25268762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 1073176 - 1073274
Alignment:
Q  36 ttaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 134  Q
    ||||| || ||||| ||||||||| || || || ||||  | |||||| |||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  1073176 ttaacaaacacccaaacataaaaatgggttatgacaccaatcatgaaatctataatgaaaagcaacaaaatgagctttaaaccaccaaaagaaaagaag 1073274  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 32794358 - 32794298
Alignment:
Q  89 aatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaacatttttcaa 149  Q
    ||||| ||||||||||||  |||||| |||||||||||||||||||||| | |||||||||    
T  32794358 aatgataaacaacaaattgcgctttataccaccaaaaggaaagaagcttgatatttttcaa 32794298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 33261235 - 33261153
Alignment:
Q  50 cacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaaga 132  Q
    ||||||| ||||| |||||||||| ||| | ||||||||||||||||   ||||   |||| ||||||||||| |||||||||    
T  33261235 cacataacaaaggattttggcaccagttgtaaaaactataatgaaaagatacaacactagccttaaaccaccagaaggaaaga 33261153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 33281394 - 33281312
Alignment:
Q  50 cacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaaga 132  Q
    ||||||| ||||| |||||||||| ||| | ||||||||||||||||   ||||   |||| ||||||||||| |||||||||    
T  33281394 cacataacaaaggattttggcaccagttgtaaaaactataatgaaaagatacaacactagccttaaaccaccagaaggaaaga 33281312  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 41996676 - 41996614
Alignment:
Q  77 tatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    |||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||| ||||    
T  41996676 tatgaaaattataatgaaaaacaataaatttggatttaaaccaccaaaaggaaagaagtttaa 41996614  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 12716185 - 12716137
Alignment:
Q  76 ttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaa 124  Q
    ||||||||||||||| ||||| ||||||||||| ||||| |||||||||    
T  12716185 ttatgaaaactataaggaaaagcaacaaatttaactttataccaccaaa 12716137  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 7320752 - 7320682
Alignment:
Q  26 gaagcacaaattaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaa 96  Q
    |||||||| |||| ||||| | || ||| | ||| || |||||||||||||||||||||| ||||||||||    
T  7320752 gaagcacatattagccaattctcaaacacacaaatgggttttggcacccgttatgaaaacaataatgaaaa 7320682  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 25708303 - 25708257
Alignment:
Q  93 aaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    ||||||||| |||||| |||||||||||||||| |||||||| ||||    
T  25708303 aaaaacaactaatttaactttaaaccaccaaaatgaaagaagtttaa 25708257  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 24997153 - 24997256
Alignment:
Q  40 ccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    ||||||||| ||||||| || || ||||||||||  | |||||||||||||| |||    ||| ||||||||||||||||||| ||||| ||||| ||||    
T  24997153 ccaatacccgcacataagaatgggttttggcaccaatcatgaaaactataataaaagtttacagatttagctttaaaccaccagaaggagagaagtttaa 24997252  T
Q  140 catt 143  Q
    ||||    
T  24997253 catt 24997256  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 11217728 - 11217675
Alignment:
Q  62 gtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaa 115  Q
    ||||||||||||  |||||||||||||||||||||| | |||||||||||||||    
T  11217728 gtttttggcaccaattatgaaaactataatgaaaaatagcaaatttagctttaa 11217675  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 14361850 - 14361932
Alignment:
Q  57 aaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    |||||| ||||||||||  |||| ||||||||||| ||||||| || |||| |||||| |||||||||| |||||||| ||||    
T  14361850 aaaagggttttggcaccaattataaaaactataataaaaaacaccagattttgctttataccaccaaaaagaaagaagtttaa 14361932  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 24954609 - 24954651
Alignment:
Q  92 gaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 134  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  24954609 gaaaaacaacaaatttagctttaaaccaccaaaatgaaagaag 24954651  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 17111844 - 17111765
Alignment:
Q  51 acataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaa 130  Q
    ||||||||||||  |||||||||  ||||||||   |||   |||||||||||||||| |||||||||||||||||||||    
T  17111844 acataaaaaagggctttggcaccaattatgaaacaaatacataaaaacaacaaatttatctttaaaccaccaaaaggaaa 17111765  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 15107280 - 15107248
Alignment:
Q  107 tagctttaaaccaccaaaaggaaagaagcttaa 139  Q
    ||||||||||||||||||| |||||||||||||    
T  15107280 tagctttaaaccaccaaaaagaaagaagcttaa 15107248  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 460315 - 460405
Alignment:
Q  40 ccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaa 130  Q
    ||||||||||||||| |   ||| |||| ||||  |||||||||   | ||| |||||||||||| |||||||||||||||||||||||||    
T  460315 ccaatacccacacatgatgtaggattttagcactagttatgaaacgaaaaattaaaaacaacaaaattagctttaaaccaccaaaaggaaa 460405  T

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Target: scaffold0792 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0792
Description:

Target: scaffold0792; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 1512 - 1609
Alignment:
Q  36 ttaaccaatacccacacataaaaaaggtttttggcacccgttatgaaaactataatgaaaaacaacaaatttagctttaaaccaccaaaaggaaagaag 134  Q
    ||||| || ||||| ||||||||| || || || ||||  | |||||| |||||||||||| ||||||| | ||| ||||||||||||||| |||||||    
T  1512 ttaacaaacacccaaacataaaaatgggttatgacaccaatcatgaaatctataatgaaaagcaacaaaatgagc-ttaaaccaccaaaagaaaagaag 1609  T

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