View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12678_low_11 (Length: 206)
Name: NF12678_low_11
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12678_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 21264190 - 21264013
Alignment:
| Q |
18 |
aatactcactatcctaaagctcataaaatcactaaagttatttggcatcctcctatccttcattggataaagtgtaacactaatggccaaggagcttgtg |
117 |
Q |
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| T |
21264190 |
aatactcactatcctaaagctcataaaatcactaaatttatttggcatcctccaatccttcattggataaagtgtaacactaatggccaagcagcttgtg |
21264091 |
T |
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| Q |
118 |
caggagtattcagaaatagaaatggggaaggcattgggtgttttgcatttaatttgggccttgcaaatgctttctgtg |
195 |
Q |
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| T |
21264090 |
caggagtattcagaaatagaaatggggaaggcattgggtgttttgcatttaatttgggccttgcaaatgctttctgtg |
21264013 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 21468751 - 21468666
Alignment:
| Q |
105 |
caaggagcttgtgcaggagtattcagaaatagaaatggggaaggcattgggtgttttgcatttaatttgggccttgcaaatgcttt |
190 |
Q |
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||||||||||||||||| | |||||||| ||||||| ||| || |||| ||||||||| ||||||| || ||| ||||||||| |
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| T |
21468751 |
caaggagcttgtgcaggtattttcagaaaccgaaatggagaaagccttggctgttttgcagttaatttagggattgaaaatgcttt |
21468666 |
T |
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