View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12678_low_2 (Length: 536)
Name: NF12678_low_2
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12678_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 22 - 454
Target Start/End: Original strand, 40122738 - 40123171
Alignment:
| Q |
22 |
ggggttggttttgcttattggataacttgtagtagttgttgccttttggctgtggctttgaatatttcattttttgatagaagctgtggctttgattgat |
121 |
Q |
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| T |
40122738 |
ggggttggttttgcttattggataatttgtagtagttgttgccttttggctgtggctttgaatatttcattttttgatagaagctgtggctttgattgat |
40122837 |
T |
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| Q |
122 |
tttgtgaatggcactctaccaacttacaaagtattaccattatgaagctgctatctgacacagtgtcataatgagaattaatttctgagaatatactgtg |
221 |
Q |
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| T |
40122838 |
tttgtgaatggcactctaccaacttacaaagtattaccattatgaagctgctatctgacacagtgtcataatgagaattaatttctgagaatatactgtg |
40122937 |
T |
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| Q |
222 |
ccgcagcagatgctggaatttactagtatttttctgnnnnnnntatatctggtgtggtgatgatatttataattcttttctcatattaaatgttgtttta |
321 |
Q |
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| T |
40122938 |
ccgcagcagatgctggaatttactagtatttttctgaaaaaattatatctggtgtggtgatgatatttataattctcttctcatattaaatgttgtttta |
40123037 |
T |
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| Q |
322 |
ggttatgtacacttaaatttcatcttctacta-ttttttgggttaccatagctaataaagtatttaggtggatcgactgtcattgacatatatacttggt |
420 |
Q |
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| T |
40123038 |
ggttatgtacacttaaatttcatcttctactatttttttgggttaccatagttaataaagtatttagatggatcgactgtcattgacatatatacttggt |
40123137 |
T |
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| Q |
421 |
gtgtggcaaagtagaagttatacttaattttact |
454 |
Q |
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| T |
40123138 |
gtgtggcaaagtagaagttatacttaattttact |
40123171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 519
Target Start/End: Original strand, 40118739 - 40118827
Alignment:
| Q |
429 |
aagtagaagttatacttaattttactggcattagtaaatagtaagagaaaattaattttactcttggttgcaggaagaagatgatttgatg |
519 |
Q |
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| T |
40118739 |
aagtagaagttatgcttaaatttgttggcattagtaaacagtaagaggaaat--attttactcttggttgcaggaggaagatgatttgatg |
40118827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 519
Target Start/End: Original strand, 40123161 - 40123200
Alignment:
| Q |
480 |
ttaattttactcttggttgcaggaagaagatgatttgatg |
519 |
Q |
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| T |
40123161 |
ttaattttactcttggttgcaggaagaagatgatttgatg |
40123200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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