View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12678_low_7 (Length: 275)

Name: NF12678_low_7
Description: NF12678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12678_low_7
NF12678_low_7
[»] chr4 (42 HSPs)
chr4 (32-112)||(37563340-37563420)
chr4 (36-111)||(52529147-52529222)
chr4 (36-111)||(54634079-54634154)
chr4 (36-113)||(30726805-30726882)
chr4 (36-111)||(40352300-40352375)
chr4 (36-112)||(26932517-26932593)
chr4 (32-112)||(26933325-26933405)
chr4 (36-87)||(39773362-39773413)
chr4 (36-111)||(49090381-49090456)
chr4 (36-110)||(1309178-1309252)
chr4 (46-111)||(1089658-1089723)
chr4 (32-113)||(13182158-13182239)
chr4 (46-111)||(49096425-49096490)
chr4 (36-111)||(6181855-6181930)
chr4 (36-107)||(9893328-9893399)
chr4 (36-111)||(31421640-31421715)
chr4 (36-111)||(46253421-46253496)
chr4 (42-112)||(30723054-30723124)
chr4 (46-111)||(1087794-1087859)
chr4 (30-106)||(49566507-49566584)
chr4 (47-111)||(13173168-13173232)
chr4 (52-111)||(49164997-49165054)
chr4 (66-113)||(41801031-41801078)
chr4 (36-112)||(55588347-55588423)
chr4 (36-111)||(3408304-3408379)
chr4 (36-111)||(21022951-21023026)
chr4 (46-113)||(54633744-54633811)
chr4 (3-49)||(6181762-6181808)
chr4 (32-114)||(7485720-7485802)
chr4 (3-49)||(40358251-40358297)
chr4 (66-112)||(41793264-41793310)
chr4 (3-49)||(41800908-41800954)
chr4 (3-40)||(9893236-9893273)
chr4 (46-111)||(26792318-26792383)
chr4 (46-111)||(37562999-37563064)
chr4 (46-111)||(49169171-49169236)
chr4 (36-113)||(55587291-55587368)
chr4 (1-49)||(1089553-1089601)
chr4 (1-49)||(1309083-1309131)
chr4 (36-84)||(16473743-16473791)
chr4 (1-49)||(37563249-37563297)
chr4 (1-49)||(54633984-54634032)
[»] chr8 (30 HSPs)
chr8 (36-111)||(184616-184691)
chr8 (36-111)||(36677993-36678068)
chr8 (3-114)||(2416134-2416245)
chr8 (36-111)||(22014499-22014574)
chr8 (36-112)||(1052491-1052567)
chr8 (32-111)||(489686-489765)
chr8 (39-110)||(15036769-15036840)
chr8 (36-112)||(15030817-15030893)
chr8 (36-108)||(26659391-26659463)
chr8 (36-112)||(45066425-45066501)
chr8 (32-111)||(23022347-23022426)
chr8 (32-111)||(42485598-42485677)
chr8 (46-111)||(22519669-22519734)
chr8 (36-112)||(25598-25674)
chr8 (24-111)||(915686-915773)
chr8 (36-107)||(22510486-22510557)
chr8 (49-111)||(45064226-45064288)
chr8 (46-107)||(483721-483782)
chr8 (46-111)||(22014180-22014245)
chr8 (30-106)||(30305601-30305678)
chr8 (30-106)||(32378979-32379056)
chr8 (30-106)||(32432934-32433011)
chr8 (32-112)||(32583986-32584066)
chr8 (36-111)||(28617503-28617578)
chr8 (46-111)||(184309-184374)
chr8 (46-111)||(23018619-23018684)
chr8 (46-111)||(36677646-36677711)
chr8 (1-49)||(184521-184569)
chr8 (1-49)||(489598-489646)
chr8 (36-112)||(28618499-28618575)
[»] chr7 (30 HSPs)
chr7 (36-111)||(10098181-10098256)
chr7 (36-111)||(42508091-42508166)
chr7 (36-111)||(15074292-15074367)
chr7 (37-111)||(41880448-41880522)
chr7 (36-113)||(18105305-18105382)
chr7 (46-111)||(20564007-20564072)
chr7 (36-111)||(35610479-35610554)
chr7 (42-107)||(40141296-40141361)
chr7 (36-113)||(48403304-48403381)
chr7 (55-111)||(618808-618864)
chr7 (36-112)||(7975673-7975749)
chr7 (30-111)||(45763313-45763395)
chr7 (30-106)||(30786485-30786562)
chr7 (30-106)||(43032912-43032989)
chr7 (30-102)||(43624203-43624276)
chr7 (46-114)||(603710-603778)
chr7 (1-49)||(15074197-15074245)
chr7 (36-112)||(46907473-46907549)
chr7 (32-111)||(18109834-18109913)
chr7 (66-113)||(20566453-20566500)
chr7 (36-111)||(27656973-27657048)
chr7 (37-111)||(7004-7078)
chr7 (3-49)||(17465684-17465730)
chr7 (3-49)||(17587484-17587530)
chr7 (66-111)||(10098267-10098312)
chr7 (32-113)||(10524416-10524497)
chr7 (36-113)||(12210653-12210730)
chr7 (3-51)||(9371358-9371406)
chr7 (36-111)||(9371451-9371527)
chr7 (36-112)||(13921327-13921403)
[»] chr3 (38 HSPs)
chr3 (36-111)||(1835084-1835159)
chr3 (39-111)||(41844431-41844503)
chr3 (36-111)||(16444542-16444617)
chr3 (39-111)||(35743352-35743425)
chr3 (36-113)||(42904246-42904323)
chr3 (36-113)||(46388890-46388967)
chr3 (46-111)||(50481457-50481522)
chr3 (36-111)||(34045342-34045417)
chr3 (37-111)||(29008820-29008894)
chr3 (46-111)||(2967999-2968064)
chr3 (66-111)||(46702119-46702164)
chr3 (32-113)||(3975664-3975745)
chr3 (30-106)||(30947711-30947788)
chr3 (46-111)||(49144530-49144595)
chr3 (66-112)||(34051440-34051486)
chr3 (66-111)||(2950267-2950312)
chr3 (36-113)||(4008386-4008463)
chr3 (49-106)||(8161047-8161104)
chr3 (46-111)||(9426565-9426630)
chr3 (46-111)||(46697645-46697710)
chr3 (49-113)||(54386065-54386129)
chr3 (46-113)||(3501969-3502036)
chr3 (36-111)||(11249587-11249662)
chr3 (1-40)||(35743458-35743497)
chr3 (32-110)||(1293312-1293390)
chr3 (3-49)||(2967896-2967942)
chr3 (3-49)||(46389014-46389060)
chr3 (3-49)||(46701996-46702042)
chr3 (3-49)||(49144427-49144473)
chr3 (66-112)||(54392122-54392168)
chr3 (36-113)||(19988392-19988469)
chr3 (46-111)||(35743654-35743719)
chr3 (66-111)||(46406718-46406763)
chr3 (66-111)||(49138515-49138560)
chr3 (46-112)||(1835401-1835464)
chr3 (66-106)||(3948667-3948707)
chr3 (1-49)||(41844333-41844381)
chr3 (32-84)||(52387746-52387798)
[»] chr2 (42 HSPs)
chr2 (36-111)||(44100636-44100711)
chr2 (42-111)||(21998148-21998217)
chr2 (36-111)||(28468575-28468650)
chr2 (36-111)||(45428550-45428625)
chr2 (46-111)||(17420502-17420567)
chr2 (36-113)||(42505826-42505903)
chr2 (36-108)||(22003465-22003537)
chr2 (36-112)||(30497013-30497089)
chr2 (55-111)||(38945696-38945752)
chr2 (36-112)||(39800716-39800792)
chr2 (36-111)||(39793897-39793972)
chr2 (36-107)||(43978474-43978545)
chr2 (37-111)||(15831061-15831135)
chr2 (36-107)||(3940793-3940864)
chr2 (46-113)||(30493291-30493358)
chr2 (32-111)||(39947534-39947613)
chr2 (3-49)||(5352020-5352066)
chr2 (46-112)||(5355605-5355671)
chr2 (49-111)||(42499687-42499749)
chr2 (30-106)||(213510-213587)
chr2 (30-106)||(10624523-10624600)
chr2 (61-113)||(3085969-3086021)
chr2 (36-112)||(29074066-29074142)
chr2 (36-108)||(43539801-43539873)
chr2 (66-113)||(17426492-17426539)
chr2 (36-111)||(20937832-20937907)
chr2 (28-111)||(20951101-20951184)
chr2 (1-40)||(21998253-21998292)
chr2 (32-111)||(26543238-26543317)
chr2 (36-111)||(43619206-43619281)
chr2 (3-49)||(3940700-3940746)
chr2 (3-49)||(15831183-15831229)
chr2 (3-49)||(20937954-20938000)
chr2 (69-111)||(28477163-28477205)
chr2 (66-107)||(3935768-3935809)
chr2 (30-106)||(5334515-5334592)
chr2 (30-106)||(18003330-18003407)
chr2 (48-111)||(5351897-5351961)
chr2 (51-111)||(10424774-10424834)
chr2 (21-113)||(36509901-36509993)
chr2 (1-49)||(42505731-42505779)
chr2 (36-112)||(43312665-43312741)
[»] chr1 (29 HSPs)
chr1 (36-113)||(44621181-44621258)
chr1 (36-111)||(13629338-13629413)
chr1 (36-111)||(19924689-19924764)
chr1 (37-111)||(8473717-8473791)
chr1 (36-111)||(3732417-3732492)
chr1 (36-111)||(26875627-26875702)
chr1 (36-111)||(30889995-30890070)
chr1 (36-111)||(38633217-38633292)
chr1 (21-111)||(43012693-43012783)
chr1 (46-111)||(26879369-26879434)
chr1 (36-111)||(22397754-22397829)
chr1 (24-111)||(47652662-47652749)
chr1 (21-111)||(43011762-43011852)
chr1 (36-113)||(586668-586745)
chr1 (30-106)||(3983025-3983102)
chr1 (46-111)||(8548743-8548808)
chr1 (30-106)||(31945919-31945996)
chr1 (30-106)||(38776184-38776261)
chr1 (46-114)||(3728666-3728734)
chr1 (30-106)||(3948460-3948539)
chr1 (50-106)||(20349396-20349452)
chr1 (1-49)||(29622393-29622441)
chr1 (201-232)||(52801795-52801826)
chr1 (25-91)||(38632446-38632512)
chr1 (46-111)||(585589-585654)
chr1 (3-40)||(2365300-2365337)
chr1 (46-111)||(15051422-15051487)
chr1 (35-111)||(30195446-30195522)
chr1 (1-49)||(30890117-30890165)
[»] chr6 (15 HSPs)
chr6 (36-111)||(26711983-26712057)
chr6 (47-107)||(30829726-30829786)
chr6 (32-113)||(11688046-11688127)
chr6 (46-111)||(27616649-27616714)
chr6 (55-112)||(18346974-18347031)
chr6 (36-112)||(13382562-13382638)
chr6 (66-111)||(11694154-11694199)
chr6 (50-106)||(1612826-1612882)
chr6 (3-51)||(11688168-11688216)
chr6 (36-111)||(6760935-6761010)
chr6 (24-75)||(35096642-35096693)
chr6 (46-112)||(6207167-6207233)
chr6 (3-49)||(27616771-27616817)
chr6 (3-49)||(30829622-30829668)
chr6 (51-111)||(32691085-32691145)
[»] scaffold0293 (2 HSPs)
scaffold0293 (36-108)||(786-858)
scaffold0293 (1-49)||(691-739)
[»] chr5 (19 HSPs)
chr5 (36-111)||(27659874-27659949)
chr5 (36-112)||(11027028-11027104)
chr5 (55-111)||(37820930-37820986)
chr5 (42-112)||(8580549-8580619)
chr5 (66-111)||(19041211-19041256)
chr5 (46-111)||(38860242-38860307)
chr5 (36-112)||(11033526-11033602)
chr5 (66-116)||(28241893-28241943)
chr5 (50-106)||(14279788-14279844)
chr5 (46-114)||(28238070-28238138)
chr5 (36-111)||(8574617-8574691)
chr5 (36-111)||(13837658-13837733)
chr5 (36-111)||(38853413-38853488)
chr5 (3-49)||(19041088-19041134)
chr5 (66-111)||(19035139-19035184)
chr5 (1-49)||(28241768-28241816)
chr5 (46-114)||(28876574-28876642)
chr5 (1-49)||(28876699-28876747)
chr5 (66-102)||(28886487-28886523)
[»] scaffold0744 (1 HSPs)
scaffold0744 (46-111)||(496-561)
[»] scaffold0101 (1 HSPs)
scaffold0101 (37-111)||(41121-41195)
[»] scaffold0494 (2 HSPs)
scaffold0494 (3-49)||(11424-11470)
scaffold0494 (36-111)||(11517-11592)
[»] scaffold0014 (1 HSPs)
scaffold0014 (66-111)||(84481-84526)
[»] scaffold0634 (1 HSPs)
scaffold0634 (36-112)||(7351-7427)
[»] scaffold0260 (1 HSPs)
scaffold0260 (50-106)||(11719-11775)
[»] scaffold0180 (1 HSPs)
scaffold0180 (32-111)||(15681-15760)
[»] scaffold1606 (1 HSPs)
scaffold1606 (66-111)||(55-100)
[»] scaffold0199 (1 HSPs)
scaffold0199 (46-111)||(10587-10652)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 37563340 - 37563420
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||    
T  37563340 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccttaccatatgtgggaacagcaattctct 37563420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 52529222 - 52529147
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  52529222 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccataccatatgtgggaacagcaattctc 52529147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 54634079 - 54634154
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  54634079 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccataccatatgtgggaacagcaattctc 54634154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 30726805 - 30726882
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  30726805 cagtttactaccgaaggacatttccgtattttactcgtgtggcacatccatactatatgtgggaacagcaattctctt 30726882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 40352375 - 40352300
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||| |||||| ||||  ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  40352375 cagtttactaccgaagagcattttcgtattttactcgtgtggcacaaccatactatatgtgggaacaacaattctc 40352300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 26932593 - 26932517
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||||||||||| |||||  |||| ||||||||||| |||| ||| |||||| |||||||||||||||||||    
T  26932593 cagtttactaccgaaggacatttgagtaatttactcgtgtgacacagccaaactatatgtgggaacagcaattctct 26932517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 26933325 - 26933405
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||||||| ||||||   ||| |||||||||||||||||||| |||| ||||| ||||| |||||||||    
T  26933325 tcgacagtttactaccgaagagcatttgattaatttactcgtgtggcacaaccaaactacacgtgcgaacatcaattctct 26933405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 39773413 - 39773362
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccata 87  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  39773413 cagtttactaccgaaggacatttccgtaacttactcgtgtggcacagccata 39773362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 49090456 - 49090381
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  49090456 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 49090381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 1309178 - 1309252
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattct 110  Q
    ||||| ||| |||||||||||||  |||  ||||||||||||||||||||||||||| |||||| ||||||||||    
T  1309178 cagttaactgccgaagggcatttttgtattttactcgtgtggcacaaccatactatatgtgggagcagcaattct 1309252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 1089658 - 1089723
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  1089658 ccgaagggcattttcgtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 1089723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 13182158 - 13182239
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||| ||| ||||| |||||||  |||  |||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  13182158 tcgacagttaactgccgaaaggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaattctctt 13182239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 49096425 - 49096490
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||||||||||||||| |||||| ||||||||||||||||||    
T  49096425 ccgaagggcattttggtattttactcgtgtggcacaaccaaactatatgtgggaacagcaattctc 49096490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 6181855 - 6181930
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  6181855 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 6181930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 9893328 - 9893399
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    ||||| ||| ||||||||||||| ||||  ||||| |||||||||| |||||||||| ||||||||||||||    
T  9893328 cagttaactgccgaagggcattttcgtattttacttgtgtggcacagccatactatatgtgggaacagcaat 9893399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 31421715 - 31421640
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| ||||||||||||| ||||  ||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  31421715 cagttaactgccgaagggcattttcgtattttactggtgtggcacagccatactatatgtgagaacagcaattctc 31421640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 46253496 - 46253421
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||| ||||||||  |||| |||||||||||||||||||| |||||| |||||||||| |||||||    
T  46253496 cagttaactgccgatgggcatttgagtaatttactcgtgtggcacaaccaaactatatgtgggaacagtaattctc 46253421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 30723124 - 30723054
Alignment:
Q  42 actaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||||||||||| ||||  |||||||||||||||| ||| || | | |||||||||||||||||||    
T  30723124 actaccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctct 30723054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 1087859 - 1087794
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||  ||||||||| |||||||||| ||||||||||||||||||    
T  1087859 ccgaagggcattttcgtattttactgatgtggcacagccatactatatgtgggaacagcaattctc 1087794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 49566507 - 49566584
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  49566507 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacaaccatactatatgtgggaacagcaa 49566584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 13173232 - 13173168
Alignment:
Q  47 cgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  13173232 cgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacatcaattctc 13173168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 49165054 - 49164997
Alignment:
Q  52 ggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||| ||||  |||||||||||||||||||||||||||  |||||||||||||||||    
T  49165054 ggcattttcgtattttactcgtgtggcacaaccatactata--tgggaacagcaattctc 49164997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 41801031 - 41801078
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  41801031 ttactcgtgtgacacagccatactatatgtgggaacagcaattctctt 41801078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 55588347 - 55588423
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||  |||| |||||||||||||| | ||| || | | |||||||||||||||||||    
T  55588347 cagttaactgccgaagggcatttgggtaaattactcgtgtggcatagccaaaccaaatgtgggaacagcaattctct 55588423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 3408304 - 3408379
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||  ||||||||||||  |||| |||||||||||| ||||||| || | | ||||||||| ||||||||    
T  3408304 cagtttactgtcgaagggcatttgagtaatttactcgtgtggtacaaccaaaccaaatgtgggaacaacaattctc 3408379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 21022951 - 21023026
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||| ||||||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  21022951 cagttaactgccgaggggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaattctc 21023026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 54633811 - 54633744
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||||| ||||  ||||||||||||||||  || || | | ||||||||||||||||||||    
T  54633811 ccgaagggcattttcgtattttactcgtgtggcacagtcaaacaacatgtgggaacagcaattctctt 54633744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 6181762 - 6181808
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  6181762 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 6181808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 7485720 - 7485802
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctcttc 114  Q
    ||||||||| ||| |||| ||||||||  |||| |||||||||||||| | ||| || | | ||||||||| |||||||||||    
T  7485720 tcgacagttaactgccgaggggcatttgggtaaattactcgtgtggcatagccaaaccaaatgtgggaacaacaattctcttc 7485802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 40358251 - 40358297
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  40358251 ttctgcgttctggttatgttcagatttcctcggcagttaactaccga 40358297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 41793310 - 41793264
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||| ||||||| ||| |||||| |||||||||||||||||||    
T  41793310 ttactcgtatggcacagccaaactatatgtgggaacagcaattctct 41793264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41800908 - 41800954
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  41800908 ttctgcgttctggttatgttcagatttcctcggcagttaactaccga 41800954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 9893236 - 9893273
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtt 40  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  9893236 ttctgcgttctggttatgttcagttttcctcggcagtt 9893273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 26792318 - 26792383
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||| |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  26792318 ccgaagggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacaacaattctc 26792383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 37563064 - 37562999
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  ||||||||||| |||| ||| || | | ||||||||||||||||||    
T  37563064 ccgaagggcattttcgtattttactcgtgtgacacagccaaacaacatgtgggaacagcaattctc 37562999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 49169171 - 49169236
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||| ||||| ||||  |||||||||||||||| ||| || | | ||||||||||||||||||    
T  49169171 ccgaaggacattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 49169236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 55587368 - 55587291
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||||||||||||  |||| |||||||||||||| | ||| || | | ||||||||| ||||||||||    
T  55587368 cagttaactgccgaagggcatttgggtaaattactcgtgtggcatagccaaaccaaatgtgggaacaacaattctctt 55587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1089553 - 1089601
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||| ||| |||||||| ||||| ||||||||    
T  1089553 ggttctacattctggttatgtccagatttcctcggcagttaactaccga 1089601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1309083 - 1309131
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||| ||| |||||||| ||||| ||||||||    
T  1309083 ggttctgcgttctggttatgtccagatttcctcggcagttaactaccga 1309131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 16473743 - 16473791
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaacc 84  Q
    ||||| ||| ||||||||||||| |||||  ||||||||||||||||||    
T  16473743 cagttaactgccgaagggcattttcgtaaagtactcgtgtggcacaacc 16473791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37563249 - 37563297
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||  ||||||||||||| ||||||||||| ||||| ||||||||    
T  37563249 ggttctgggttctggttatgttgagttttcctcggcagttaactaccga 37563297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54633984 - 54634032
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||  ||||||||||||| ||||||||||| ||||| ||||||||    
T  54633984 ggttctgggttctggttatgttgagttttcctcggcagttaactaccga 54634032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 184616 - 184691
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  184616 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccataccatatgtgggaacagcaattctc 184691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 36677993 - 36678068
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  36677993 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccataccatatgtgggaacagcaattctc 36678068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 2416245 - 2416134
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaaca 102  Q
    |||||| ||||||||||||||||||||||||| ||||| |||  |||||| |||||  |||  ||||| |||||||||| |||||||||| |||||||||    
T  2416245 ttctgcgttctggttatgttcagttttcctcggcagttaactgtcgaaggacattttggtattttacttgtgtggcacagccatactatatgtgggaaca 2416146  T
Q  103 gcaattctcttc 114  Q
     |||||||||||    
T  2416145 acaattctcttc 2416134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 22014499 - 22014574
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||| ||||||||||    
T  22014499 cagtttactaccgaagggcatttccgtaatttactcgtgtggcacagccataccatacgtgcgaagagcaattctc 22014574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 1052567 - 1052491
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||||||||||||||||| ||||  ||||| |||||||||| |||||||||| |||||||||||||||||||    
T  1052567 cagttaactaccgaagggcattttcgtattttactggtgtggcacatccatactatatgtgggaacagcaattctct 1052491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 489686 - 489765
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  489686 tcgacagttaactgccgaagggcattttagtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 489765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 15036769 - 15036840
Alignment:
Q  39 tttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattct 110  Q
    |||||||||||||||||||| ||||| |||||||||||||||| ||| |||||  ||||||||| |||||||    
T  15036769 tttactaccgaagggcatttgcgtaatttactcgtgtggcacagccaaactatgtgtgggaacaacaattct 15036840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 15030893 - 15030817
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| ||| || | | ||||||||| |||||||||    
T  15030893 cagtttactaccgaagggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacaacaattctct 15030817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 26659463 - 26659391
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaatt 108  Q
    ||||| ||| ||||||||||||| ||||  ||||| |||||||||| |||||||||| |||||||||||||||    
T  26659463 cagttaactgccgaagggcattttcgtattttactggtgtggcacagccatactatatgtgggaacagcaatt 26659391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 45066425 - 45066501
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| ||| || | | ||||||||| |||||||||    
T  45066425 cagtttactaccgaagggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacaacaattctct 45066501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 23022347 - 23022426
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||| ||| ||||||||||||| ||||  |||||  ||||||||| |||||||||| ||||||||| ||||||||    
T  23022347 tcgacagttaactgccgaagggcattttcgtattttactgatgtggcacagccatactatatgtgggaacaacaattctc 23022426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 42485598 - 42485677
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||| ||| ||||||| |||||   ||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  42485598 tcgacagttaactgccgaaggacattttgatattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 42485677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 22519669 - 22519734
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||||||||||||||| |||||| |||||||||| |||||||    
T  22519669 ccgaagggcattttggtattttactcgtgtggcacaaccaaactatatgtgggaacagtaattctc 22519734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 25598 - 25674
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||   ||  |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  25598 cagttaactgccgaagggcattttgatattttactcgtgtggcacagccatactatatgtgggaacaacaattctct 25674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 915686 - 915773
Alignment:
Q  24 agttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||| |||  ||||||| ||||  |||| |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  915686 agttttcctcgacagttaactgtcgaagggtatttgagtaatttactcgtgtggcacagccaaaccaaaagtgggaacaacaattctc 915773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 22510557 - 22510486
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||| ||||||||||    
T  22510557 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgagaacagcaat 22510486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 45064288 - 45064226
Alignment:
Q  49 aagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||  |||| ||||||||||||||||||||  ||| || |||||||||||||||||    
T  45064288 aagggcatttgagtaatttactcgtgtggcacaaccaatctaaacctgggaacagcaattctc 45064226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 483782 - 483721
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    |||||||||||||  |||  |||||||||||||||||||| |||||| ||||||||| ||||    
T  483782 ccgaagggcattttggtattttactcgtgtggcacaaccaaactatatgtgggaacaacaat 483721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 22014245 - 22014180
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||||||||||||    
T  22014245 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 22014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 30305601 - 30305678
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  30305601 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 30305678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 32378979 - 32379056
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  32378979 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 32379056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 32432934 - 32433011
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  32432934 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 32433011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 32584066 - 32583986
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||| |||||||| ||| ||||  |||| |||||||||||||||| | | | || | |||||||||||||||||||    
T  32584066 tcgacagttaactaccgaggggtatttgagtaatttactcgtgtggcacagctaaagtaaaagtgggaacagcaattctct 32583986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 28617578 - 28617503
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||| ||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  28617578 cagttaactgccgaagggtatttgagtaatttactcgtgtggcacagccaaaccaaaagtgggaacagcaattctc 28617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 184374 - 184309
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  184374 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacaacaattctc 184309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 23018684 - 23018619
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | |||| |||||||||||||    
T  23018684 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaagatgtggaaacagcaattctc 23018619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 36677711 - 36677646
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  36677711 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacaacaattctc 36677646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 184521 - 184569
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||  ||||||||||||| ||||||||||| ||||| ||||||||    
T  184521 ggttctgggttctggttatgttgagttttcctcggcagttaactaccga 184569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 489598 - 489646
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||| ||| |||||||| ||||| ||||||||    
T  489598 ggttctgcgttctggttatgtccagatttcctcggcagttaactaccga 489646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 28618499 - 28618575
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||  |||| ||||| |||||||| | ||| || | | |||||||||||||||||||    
T  28618499 cagttaactgccgaagggcatttgggtaaattacttgtgtggcatagccaaaccaaatgtgggaacagcaattctct 28618575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 10098181 - 10098256
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  10098181 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccataccatatgtgggaacagcaattctc 10098256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 42508091 - 42508166
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  42508091 cagtttactaccgaagggcatttccgtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 42508166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 15074292 - 15074367
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  15074292 cagtttactaccgaagggcattttcgtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 15074367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 41880522 - 41880448
Alignment:
Q  37 agtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||| ||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  41880522 agttaactgccgaagggcattttcgtattttactcgtgtggcacaaccatactatatgtgggaacaacaattctc 41880448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 18105382 - 18105305
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||||||||| ||||||||||  |||||||||||| ||  |||||||||| ||||||||| ||||||||||    
T  18105382 cagtttactaccgaaggacatttccgtattttactcgtgtggtacggccatactatatgtgggaacaacaattctctt 18105305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 20564072 - 20564007
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||| |||||||||||||||||| ||||||||||||||||||    
T  20564072 ccgaagggcattttggtattttactcgtatggcacaaccatactatatgtgggaacagcaattctc 20564007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 35610479 - 35610554
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| ||||| ||||||| ||||  ||||| |||||||||| |||||||||| ||||||||||||||||||    
T  35610479 cagttaactgccgaatggcattttcgtattttactggtgtggcacagccatactatatgtgggaacagcaattctc 35610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 40141296 - 40141361
Alignment:
Q  42 actaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    |||||||||||||||||  |||| |||||||||||||||| ||| |||||| ||||||||| ||||    
T  40141296 actaccgaagggcatttgagtaatttactcgtgtggcacagccaaactatatgtgggaacaacaat 40141361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 48403381 - 48403304
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||||||||||||  |||  ||||| |||||||||| |||||||||| |||||||||||||| |||||    
T  48403381 cagttaactgccgaagggcatttttgtattttactggtgtggcacagccatactatatgtgggaacagcaatactctt 48403304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 618808 - 618864
Alignment:
Q  55 atttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||||| |||||||||||||||| |||||||||| ||||||| ||||||||||    
T  618808 atttgcgtaaattactcgtgtggcacagccatactatatgtgggaagagcaattctc 618864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 7975673 - 7975749
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||| ||||||| ||||| |||||  ||||||||||||||||||| || | | ||||||||| |||||||||    
T  7975673 cagtttactgccgaaggacattttcgtaaagtactcgtgtggcacaaccaaaccaaatgtgggaacaacaattctct 7975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 45763395 - 45763313
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| ||||||||||||| ||||    
T  45763395 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaaatctc 45763313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 30786562 - 30786485
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  30786562 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 30786485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 43032989 - 43032912
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| |||||||| |||| |||| ||||| ||| | |||||||||| |||||||||| |||||||||||||    
T  43032989 cctcggcagttaactaccgagagggtatttgcgtaaattattggtgtggcacagccatactatatgtgggaacagcaa 43032912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 43624203 - 43624276
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaaca 102  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| ||||||||||||||||||||| |||||||||    
T  43624203 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacaaccatactatatgtgggaaca 43624276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 603778 - 603710
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctcttc 114  Q
    |||||||||||||  |||  |||||||||||||||| ||| || | | |||||||||||||||||||||    
T  603778 ccgaagggcattttggtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctcttc 603710  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15074197 - 15074245
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||| ||| |||||||||||||| ||||||||    
T  15074197 ggttctgcgttctggttatgtccagatttcctcgacagttaactaccga 15074245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 46907549 - 46907473
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||  |||| |||||||||||||| | ||| || | | |||||||||||||||||||    
T  46907549 cagttaactgccgaagggcatttgagtaatttactcgtgtggcatagccaaaccaaatgtgggaacagcaattctct 46907473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 18109834 - 18109913
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| |||||||||||||   ||| |||||||||| ||||| ||| || | | ||||||||| ||||||||    
T  18109834 tcgacagtttactgccgaagggcatttgaataatttactcgtgtagcacagccaaaccaaatgtgggaacaacaattctc 18109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 20566453 - 20566500
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    |||||||||||||||| ||| |||||| ||||||||| ||||||||||    
T  20566453 ttactcgtgtggcacagccaaactatatgtgggaacaacaattctctt 20566500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 27657048 - 27656973
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||| ||||||||   ||| |||||||||||||||||||| || | | ||||||||||||||||||    
T  27657048 cagttaactgccgaggggcatttgaataatttactcgtgtggcacaaccaaaccaaatgtgggaacagcaattctc 27656973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 7078 - 7004
Alignment:
Q  37 agtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||| |||| ||||||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  7078 agttaactgccgaggggcatttgagtaatttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 17465684 - 17465730
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  17465684 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 17465730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 17587530 - 17587484
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  17587530 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 17587484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 10098312 - 10098267
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||| ||| |||||| ||||||||| ||||||||    
T  10098312 ttactcgtgtggcacagccaaactatatgtgggaacaacaattctc 10098267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 10524416 - 10524497
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||| ||| |||| ||||||||  |||| ||||||||||| |||| ||| || | | ||||||||| ||||||||||    
T  10524416 tcgacagttaactgccgaggggcatttgagtaatttactcgtgtgacacagccaaaccaaatgtgggaacaacaattctctt 10524497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 12210653 - 12210730
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||| ||||||||  |||| |||||||| ||||||| ||| || | | ||||||||||||||||||||    
T  12210653 cagttaactgccgaggggcatttgagtaatttactcgtatggcacagccaaaccaaatgtgggaacagcaattctctt 12210730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 9371358 - 9371406
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccgaag 51  Q
    |||||| ||||||||||| ||||||||||||| ||||| ||| ||||||    
T  9371358 ttctgcgttctggttatgatcagttttcctcggcagttaactgccgaag 9371406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 9371451 - 9371527
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccata-ctatacgtgggaacagcaattctc 111  Q
    ||||| ||| || ||||||||||  |||  ||||| |||||||||||||||| ||||| ||||||||| ||||||||    
T  9371451 cagttaactgccaaagggcattttggtattttacttgtgtggcacaaccatacctatatgtgggaacaacaattctc 9371527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 13921327 - 13921403
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||| | ||||||  |||| |||||||||||||||||||| || | | ||||||||| |||||||||    
T  13921327 cagttaactgccgaggagcatttgagtaatttactcgtgtggcacaaccaaaccaaatgtgggaacaacaattctct 13921403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 1835159 - 1835084
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  1835159 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacagccataccatatgtgggaacagcaattctc 1835084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 41844431 - 41844503
Alignment:
Q  39 tttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||| ||| || |||||| ||||||||    
T  41844431 tttactaccgaaaggcatttccgtaacttactcgtgtggcacagccataccatatgtaggaacaacaattctc 41844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 16444617 - 16444542
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  16444617 cagttaactgccgaagggcattttggtattttactcgtgtggcacaaccatactatatgtgggaacagcaattctc 16444542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 35743425 - 35743352
Alignment:
Q  39 tttactaccgaaggg-catttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || | |||| ||||||||    
T  35743425 tttactaccgaaggggcatttccgtaacttactcgtgtggcacagccatactatatgtagcaacaacaattctc 35743352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 42904246 - 42904323
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| ||||||||||||| ||||  ||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  42904246 cagttaactgccgaagggcattttcgtattttactggtgtggcacagccatactatatgtgggaacagcaattctctt 42904323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 46388967 - 46388890
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  46388967 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctctt 46388890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 50481457 - 50481522
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  50481457 ccgaagggcattttcgtattttactggtgtggcacaaccatactatatgtgggaacagcaattctc 50481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 34045417 - 34045342
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  34045417 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 34045342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 29008894 - 29008820
Alignment:
Q  37 agtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||| ||||||||||||| ||||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  29008894 agttaactgccgaagggcattttcgtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 29008820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 2967999 - 2968064
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  2967999 ccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 2968064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 46702119 - 46702164
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  46702119 ttactcgtgtggcacaaccatactatatgtgggaacagcaattctc 46702164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 3975745 - 3975664
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||||||||| ||| || | | ||||| ||| ||||||||||    
T  3975745 tcgacagtttactgccgaagggcattttcgtaaagtactcgtgtggcacagccaaaccaaatgtgggtacaacaattctctt 3975664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 30947711 - 30947788
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  30947711 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacaaccatactatatgtgggaacagcaa 30947788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 49144530 - 49144595
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  ||||||||||| |||| |||||||||| ||||||||||||||||||    
T  49144530 ccgaagggcattttggtattttactcgtgtgacacagccatactatatgtgggaacagcaattctc 49144595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 34051440 - 34051486
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||    
T  34051440 ttactcgtgtggcacagccaaactatatgtgggaacagcaattctct 34051486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 2950312 - 2950267
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||||    
T  2950312 ttactcgtgtgacacaaccaaactatatgtgggaacagcaattctc 2950267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 4008386 - 4008463
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||| |||||||||||||  ||||  ||||||||||||||  ||| || | | ||||||||||||||||||||    
T  4008386 cagtttactgccgaagggcatttttgtaaaatactcgtgtggcacggccaaaccaaatgtgggaacagcaattctctt 4008463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 8161047 - 8161104
Alignment:
Q  49 aagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  8161047 aagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 8161104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 9426630 - 9426565
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||| ||||||| || | | ||||||||||||||||||    
T  9426630 ccgaagggcattttcgtattttactcgtgtggtacaaccaaacaacatgtgggaacagcaattctc 9426565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 46697710 - 46697645
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||||||||||||    
T  46697710 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaagatgtgggaacagcaattctc 46697645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 54386129 - 54386065
Alignment:
Q  49 aagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||  |||  |||||||||||||||| |||||||||| ||| ||| ||||||||||||    
T  54386129 aagggcattttggtattttactcgtgtggcacagccatactatatgtgagaagagcaattctctt 54386065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 3501969 - 3502036
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    |||||||||| || ||||  |||||||||||||||||||| || | | ||||||||| ||||||||||    
T  3501969 ccgaagggcagtttcgtattttactcgtgtggcacaaccaaacaacatgtgggaacaacaattctctt 3502036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 11249587 - 11249662
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||| ||||  |||| |||||||||||||||| ||| | || | ||||||||||||||||||    
T  11249587 cagttaactgccgaagggtatttgagtaatttactcgtgtggcacagccaaagtaaaagtgggaacagcaattctc 11249662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35743497 - 35743458
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtt 40  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  35743497 ggttctgcgttctggttatgttcagttttcctcggcagtt 35743458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 1293390 - 1293312
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattct 110  Q
    ||||||||||||| ||||||||||||| |||||  || |  ||||||||||||| |  | | |||||||||||||||||    
T  1293390 tcgacagtttactgccgaagggcattttcgtaaagtatttatgtggcacaaccaaagcaaatgtgggaacagcaattct 1293312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 2967896 - 2967942
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  2967896 ttctgcgttctggttatgttcagatttcctcggcagttaactaccga 2967942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 46389060 - 46389014
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  46389060 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 46389014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 46701996 - 46702042
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  46701996 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 46702042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 49144427 - 49144473
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  49144427 ttctgcgttctggttatgttcagatttcctcggcagttaactaccga 49144473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 54392122 - 54392168
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||| ||| |||||| |||||||||||||| ||||    
T  54392122 ttactcgtgtggcacagccaaactatatgtgggaacagcaatactct 54392168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 19988469 - 19988392
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||| ||||||||  |||| |||||||||||||||| ||| || | | ||| ||||||||||||||||    
T  19988469 cagttaactgccgaggggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgagaacagcaattctctt 19988392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 35743654 - 35743719
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||||||| ||||  |||||||||||||||| ||| || | | ||||||||||||||||||    
T  35743654 ccgaatggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 35743719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 46406718 - 46406763
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||| |||| ||| |||||| ||||||||||||||||||    
T  46406718 ttactcgtgtgacacagccaaactatatgtgggaacagcaattctc 46406763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 49138560 - 49138515
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||| ||||||||| ||| |||||| ||||||||||||||||||    
T  49138560 ttactcatgtggcacagccaaactatatgtgggaacagcaattctc 49138515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 1835401 - 1835464
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||||||| ||||  |||||||||||||||||||| ||   | |||||||||||||||||||    
T  1835401 ccgaaaggcattttcgtattttactcgtgtggcacaaccaaac---atgtgggaacagcaattctct 1835464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 3948707 - 3948667
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| |||||||||| |||||||||| |||||||||||||    
T  3948707 ttactggtgtggcacagccatactatatgtgggaacagcaa 3948667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41844333 - 41844381
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||  ||||||||||||| ||||||||||| ||||| ||||||||    
T  41844333 ggttctgggttctggttatgttgagttttcctcggcagttaactaccga 41844381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 52387798 - 52387746
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaacc 84  Q
    ||||||||| ||| ||||||||||||| |||||  ||||| ||||||||||||    
T  52387798 tcgacagttaactgccgaagggcattttcgtaaaatactcatgtggcacaacc 52387746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 44100711 - 44100636
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| ||||||||||||||    
T  44100711 cagtttactaccgaagggcatttccgtaacttactcatgtggcacagccataccatatgtgagaacagcaattctc 44100636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 21998217 - 21998148
Alignment:
Q  42 actaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||  |||| |||||||||||||||||||| |||||| ||||||||| ||||||||    
T  21998217 actaccgaagggcatttgagtaatttactcgtgtggcacaaccaaactatatgtgggaacatcaattctc 21998148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 28468650 - 28468575
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||| ||||||| |||| ||||  |||||||||||||||| ||| |||||||||||||||| ||||||||    
T  28468650 cagtttactatcgaagggtatttgcgtattttactcgtgtggcacagccaaactatacgtgggaacaacaattctc 28468575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 45428625 - 45428550
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||| |||||||||  ||||||||||| |||| ||||| |||| ||||||||| ||||||||    
T  45428625 cagtttactaccgaagggtatttccgtattttactcgtgtgacacagccatattatatgtgggaacaacaattctc 45428550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 17420567 - 17420502
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  17420567 ccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 17420502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 42505826 - 42505903
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||||||| ||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  42505826 cagttaactgccgaagggtattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctctt 42505903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 22003465 - 22003537
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaatt 108  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| ||| || | | |||||||||||||||    
T  22003465 cagtttactaccgaagggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaatt 22003537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 30497013 - 30497089
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  30497013 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaattctct 30497089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 38945752 - 38945696
Alignment:
Q  55 atttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||    
T  38945752 atttgcgtaaattactcgtgtggcacagccatactatatgtgggaacagcaattctc 38945696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 39800716 - 39800792
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||   ||  |||||||||||||||| |||||||||| |||||||||||||||||||    
T  39800716 cagttaactgccgaagggcattttgatattttactcgtgtggcacagccatactatatgtgggaacagcaattctct 39800792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 39793972 - 39793897
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||   ||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  39793972 cagttaactgccgaagggcattttgatattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 39793897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 43978545 - 43978474
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||    
T  43978545 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaat 43978474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 15831135 - 15831061
Alignment:
Q  37 agtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||| |||||||| |||| ||||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  15831135 agttaactgccgaagggaattttcgtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 15831061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 3940793 - 3940864
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| ||||    
T  3940793 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaat 3940864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 30493358 - 30493291
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||||||||||||||    
T  30493358 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaagatgtgggaacagcaattctctt 30493291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 39947613 - 39947534
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||| |||| |||||  ||||||||||||||| | | || | | ||||||||| ||||||||    
T  39947613 tcgacagtttactaccgaagggtattttcgtaaagtactcgtgtggcacagcaaaaccaaatgtgggaacaacaattctc 39947534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 5352066 - 5352020
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  5352066 ttctgcgttctggttatgttcagttttcctcggcagttaactaccga 5352020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 5355605 - 5355671
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | |||||||||||||||||||    
T  5355605 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctct 5355671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 42499749 - 42499687
Alignment:
Q  49 aagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||  |||  |||||||||||||||| ||| |||||| ||||||||||||||||||    
T  42499749 aagggcattttggtattttactcgtgtggcacagccaaactatatgtgggaacagcaattctc 42499687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 213510 - 213587
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  213510 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 10624523 - 10624600
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  10624523 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 10624600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 3086021 - 3085969
Alignment:
Q  61 gtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    |||| |||||||||||||||||||| |||| | ||||||||| ||||||||||    
T  3086021 gtaatttactcgtgtggcacaaccaaactaaatgtgggaacaacaattctctt 3085969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 29074066 - 29074142
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||| ||||||||  |||| |||||||||||||||||||| || | | ||||||||| |||||||||    
T  29074066 cagttaactgccgaggggcatttgagtaatttactcgtgtggcacaaccaaaccaaatgtgggaacaacaattctct 29074142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 43539801 - 43539873
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaatt 108  Q
    ||||| ||| ||||||| ||||| || |  ||||| ||||||||||||||||||||| ||||||||| |||||    
T  43539801 cagttaactgccgaaggacattttcgcattttactggtgtggcacaaccatactatatgtgggaacaacaatt 43539873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 17426492 - 17426539
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    |||||||||||||||| ||| |||||| ||||||||| ||||||||||    
T  17426492 ttactcgtgtggcacagccaaactatatgtgggaacaacaattctctt 17426539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 20937907 - 20937832
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||| |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  20937907 cagttaactgccgaagggcatttaggtaatttactcgtgtggcacagccaaaccaaatgtgggaacaacaattctc 20937832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 20951101 - 20951184
Alignment:
Q  28 ttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||| ||||| ||| |||||||||||||  |||| ||||| |||||||||| || ||  | | ||||||||||||||||||    
T  20951101 ttcctcggcagttaactgccgaagggcatttaggtaatttactggtgtggcacagccttatcacatgtgggaacagcaattctc 20951184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21998292 - 21998253
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtt 40  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  21998292 ggttctgcgttctggttatgttcagttttcctcggcagtt 21998253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 26543317 - 26543238
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||| | ||||||| ||||| |||||  ||||||||||||||| ||| || | | ||||||||| ||||||||    
T  26543317 tcgacagtttagtgccgaaggacattttcgtaaagtactcgtgtggcacagccaaaccaaatgtgggaacaacaattctc 26543238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 43619206 - 43619281
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||   ||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  43619206 cagttaactgccgaagggcatttgattaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaattctc 43619281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 3940700 - 3940746
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  3940700 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 3940746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 15831229 - 15831183
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  15831229 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 15831183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 20938000 - 20937954
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  20938000 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 20937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 28477163 - 28477205
Alignment:
Q  69 ctcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||    
T  28477163 ctcgtgtggcacaaccaaactatatgtgggaacaacaattctc 28477205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 3935809 - 3935768
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    |||||||||||||||| ||| |||||| ||||||||||||||    
T  3935809 ttactcgtgtggcacagccaaactatatgtgggaacagcaat 3935768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 5334592 - 5334515
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||||||||| ||| |||| |||  |||| ||||| ||||| |||||||||| || ||||||| |||||||||||||    
T  5334592 cctcgacagttaactgccgagaggatatttgcgtaaattactggtgtggcacagccctactatatgtgggaacagcaa 5334515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 18003330 - 18003407
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| || ||||||| |||||||||| |||||||||||||    
T  18003330 cctcggcagttaactgccgagagggtatttgcgtaaattactggtttggcacagccatactatatgtgggaacagcaa 18003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 5351961 - 5351897
Alignment:
Q  48 gaagggcatttccgtaacttactcgtgtggcacaac-catactatacgtgggaacagcaattctc 111  Q
    |||||||||||  |||  |||||||||||||||| | ||||||||| ||||||||| ||||||||    
T  5351961 gaagggcattttggtattttactcgtgtggcacagcgcatactatatgtgggaacaacaattctc 5351897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 10424834 - 10424774
Alignment:
Q  51 gggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  10424834 gggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaattctc 10424774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 36509993 - 36509901
Alignment:
Q  21 ttcagttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||||||||  |||||||| |||| || |||||  |||| ||||||||||| || | ||| || | | ||||||||| ||||||||||    
T  36509993 ttcagttttcctcggtagtttactgccgagggacatttgagtaatttactcgtgtgacatagccaaaccaaatgtgggaacaacaattctctt 36509901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42505731 - 42505779
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||| ||| |||||||| ||||| ||||||||    
T  42505731 ggttctgcgttctggttatgtccagatttcctcggcagttaactaccga 42505779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 43312741 - 43312665
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||| ||||||||||||| |||||  || |||||||| ||| ||| || | | ||||||||| |||||||||    
T  43312741 cagtttactgccgaagggcattttcgtaaaatattcgtgtggtacagccaaaccaaatgtgggaacaacaattctct 43312665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 44621181 - 44621258
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44621181 cagttaactgccgaagggcattttcgtattttactcgtgtggcacaaccatactatacgtgggaacaacaattctctt 44621258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 13629413 - 13629338
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13629413 cagttaactgccgaagggcattttggtattttactcgtgtggcacaaccatactatatgtgggaacagcaattctc 13629338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 19924764 - 19924689
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  19924764 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 19924689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 8473791 - 8473717
Alignment:
Q  37 agtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||| ||||||||||||| ||||  |||||||||||||||| |||||||||| |||||||||| |||||||    
T  8473791 agttaactgccgaagggcattttcgtattttactcgtgtggcacatccatactatatgtgggaacagtaattctc 8473717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 3732417 - 3732492
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| ||||| |||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  3732417 cagttaactgccgaatggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 3732492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 26875702 - 26875627
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  ||||| |||||||||| |||||||||||||||||| ||||||||||    
T  26875702 cagttaactgccgaagggcatttttgtattttactggtgtggcacagccatactatacgtgggaatagcaattctc 26875627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 30890070 - 30889995
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  30890070 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 30889995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 38633217 - 38633292
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||| |||| |||||||  |||| |||||||||||||||| ||| |||||| ||||||||| ||||||||    
T  38633217 cagtttactatcgaaaggcatttgagtaatttactcgtgtggcacagccaaactatatgtgggaacaacaattctc 38633292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 43012693 - 43012783
Alignment:
Q  21 ttcagttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||| |||||||| ||||| |||||||  |||| |||||||||||||| | ||| || | | ||||||| ||||||||||    
T  43012693 ttcagttttcctcgatagtttactgccgaaaggcatttgagtaatttactcgtgtggcatagccaaaccaaatgtgggaagagcaattctc 43012783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 26879369 - 26879434
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  ||||| |||||||||| |||||||||| ||||||||| ||||||||    
T  26879369 ccgaagggcattttcgtattttactggtgtggcacagccatactatatgtgggaacaacaattctc 26879434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 22397829 - 22397754
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||| ||||  |||  |||||||||||||||| || ||||||||||||||||| ||||||||    
T  22397829 cagttaactgccgaagggtattttggtattttactcgtgtggcacagccttactatacgtgggaacaacaattctc 22397754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 47652749 - 47652662
Alignment:
Q  24 agttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||| ||||| ||| |||| || |||||  |||| ||||||||||| |||| ||| || | ||||||||||||||||||||    
T  47652749 agttttcctcggcagttaactgccgagggacatttgagtaatttactcgtgtgacacagccaaaccaaacgtgggaacagcaattctc 47652662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 43011852 - 43011762
Alignment:
Q  21 ttcagttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||| ||||| ||| |||| ||| ||||  |||| |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  43011852 ttcagttttcctcggcagttaactgccgaggggtatttgagtaatttactcgtgtggcacagccaaaccaaaagtgggaacaacaattctc 43011762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 586668 - 586745
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||| ||| |||||||| ||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||||    
T  586668 cagttaactgccgaagggtatttgagtaatttactcgtgtggcacagccaaaccaaaagtgggaacagcaattctctt 586745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 3983102 - 3983025
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  3983102 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 3983025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 8548743 - 8548808
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||||||||||||    
T  8548743 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacagcaattctc 8548808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 31945919 - 31945996
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  31945919 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 31945996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 38776184 - 38776261
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    ||||| ||||| ||| |||| |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  38776184 cctcggcagttaactgccgagagggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 38776261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 3728734 - 3728666
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctcttc 114  Q
    |||||| |||||| ||||  |||||||||||||||| ||| || | | |||||||||||||||||||||    
T  3728734 ccgaagagcattttcgtattttactcgtgtggcacagccaaacaagatgtgggaacagcaattctcttc 3728666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 3948460 - 3948539
Alignment:
Q  30 cctcgacagtttactaccga-agggcatttccgtaacttactcgtgtggcacaaccatactata--cgtgggaacagcaa 106  Q
    ||||| ||||| |||||||| |||| |||| ||||| ||||| |||||||||||||||||||||   |||||||||||||    
T  3948460 cctcggcagttaactaccgagagggtatttgcgtaaattactggtgtggcacaaccatactatatgtgtgggaacagcaa 3948539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 20349452 - 20349396
Alignment:
Q  50 agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  20349452 agggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 20349396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29622393 - 29622441
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  29622393 ggttctgcgttctggttatgttcagatttcctcggcagttaactaccga 29622441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 52801826 - 52801795
Alignment:
Q  201 ttcaatctcatttggtcttgccgtttctctct 232  Q
    ||||||||||||||||||||||||||||||||    
T  52801826 ttcaatctcatttggtcttgccgtttctctct 52801795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 38632512 - 38632446
Alignment:
Q  25 gttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactat 91  Q
    |||||| ||| ||||| |||||||||||||||||  |||| |||||| ||||||||| ||| |||||    
T  38632512 gttttcttcggcagttaactaccgaagggcatttgagtaatttactcctgtggcacagccaaactat 38632446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 585654 - 585589
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||| |||||| ||||||| | ||| |||| | ||||||||||||||||||    
T  585654 ccgaagggcatttgggtaaattactcctgtggcatagccaaactaaatgtgggaacagcaattctc 585589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 2365337 - 2365300
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtt 40  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  2365337 ttctgcgttctggttatgttcagttttcctcggcagtt 2365300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 15051422 - 15051487
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  ||||||||||| |||||||| || | | ||||||| ||||||||||    
T  15051422 ccgaagggcattttcgtattttactcgtgtgacacaaccaaacaacatgtgggaagagcaattctc 15051487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 30195446 - 30195522
Alignment:
Q  35 acagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||| ||| |||||||||||||  |||| |||||||||||||| | ||| || | | ||||||||| ||||||||    
T  30195446 acagttaactgccgaagggcatttgagtaatttactcgtgtggcatagccaaaccaaatgtgggaacaacaattctc 30195522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30890165 - 30890117
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||| ||| |||||||| ||||| ||||||||    
T  30890165 ggttctgcgttctggttatgtccagatttcctcggcagttaactaccga 30890117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 26712057 - 26711983
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||| ||||||||||||||||||    
T  26712057 cagtttactaccgaagggcatttccgtaacttactcgtttggcacagcc-taccatatgtgggaacagcaattctc 26711983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 30829726 - 30829786
Alignment:
Q  47 cgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaat 107  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||    
T  30829726 cgaagggcattttcgtattttactcgtgtggcacaaccatactatatgtgggaacagcaat 30829786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 11688127 - 11688046
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctctt 113  Q
    ||||||||| ||| |||||||||||||  |||  |||||||||||||||| ||||||| || ||||||||| ||||||||||    
T  11688127 tcgacagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactgtatgtgggaacaacaattctctt 11688046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 27616714 - 27616649
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  27616714 ccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 27616649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 18347031 - 18346974
Alignment:
Q  55 atttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||| ||||| |||||| |||||||||||||||||||| ||||||||| |||||||||    
T  18347031 atttgcgtaaattactcatgtggcacaaccatactatatgtgggaacaacaattctct 18346974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 13382638 - 13382562
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||||||||||| |||||  |||| |||||||||||||||| ||| || | | ||||||||| |||||||||    
T  13382638 cagtttactaccgaaggacatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacaacaattctct 13382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 11694154 - 11694199
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||    
T  11694154 ttactcgtgtggcacagccaaactatatgtgggaacagcaattctc 11694199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 1612826 - 1612882
Alignment:
Q  50 agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  1612826 agggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 1612882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 11688216 - 11688168
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccgaag 51  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||||    
T  11688216 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgaag 11688168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 6760935 - 6761010
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| |||||| | ||||||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  6760935 cagttaactaccaaggggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaattctc 6761010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 35096693 - 35096642
Alignment:
Q  24 agttttcctcgacagtttactaccgaagggcatttccgtaacttactcgtgt 75  Q
    ||||||||||| ||||| |||||||||||||||||  |||| ||||||||||    
T  35096693 agttttcctcggcagttaactaccgaagggcatttgagtaatttactcgtgt 35096642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 6207167 - 6207233
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||  |||  ||||||||||||||||  || |||||| ||||||| |||||||||||    
T  6207167 ccgaagggcattttggtattttactcgtgtggcacagtcaaactatatgtgggaaaagcaattctct 6207233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 27616817 - 27616771
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  27616817 ttctgcgttctggttatgttcagatttcctcggcagttaactaccga 27616771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 30829622 - 30829668
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  30829622 ttctgcgttctggttatgttcagttttcctcggcagttaactgccga 30829668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 32691145 - 32691085
Alignment:
Q  51 gggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||| ||||| ||||| |||||||||||||| || | | ||||||||| ||||||||    
T  32691145 gggcatttgcgtaatttacttgtgtggcacaaccaaaccaaatgtgggaacaacaattctc 32691085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 786 - 858
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaatt 108  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||| ||||||||| |||||    
T  786 cagtttactaccgaagggcatttccgtattttactcatgtggcacagccatactatatgtgggaacaacaatt 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 691 - 739
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| || ||||||||| |||||||||||| ||||| ||||||||    
T  691 ggttctgcgttatggttatgtccagttttcctcggcagttaactaccga 739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 27659949 - 27659874
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||  |||| |||||||||||||||| ||| || | | ||||||||||||||||||    
T  27659949 cagtttactaccgaagggcatttgagtaatttactcgtgtggcacagccaaaccaaatgtgggaacagcaattctc 27659874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 11027104 - 11027028
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| |||||||||    
T  11027104 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaattctct 11027028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 37820930 - 37820986
Alignment:
Q  55 atttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  37820930 atttgcgtaatttactcgtgtggcacaaccatactatatgtgggaacaacaattctc 37820986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 8580549 - 8580619
Alignment:
Q  42 actaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    |||||||||||||||||  |||| |||||||||||||||| | | |||||| ||||||| |||||||||||    
T  8580549 actaccgaagggcatttgagtaatttactcgtgtggcacagctaaactatatgtgggaatagcaattctct 8580619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 19041211 - 19041256
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||    
T  19041211 ttactcgtgtggcacagccatactatatgtgggaacagcaattctc 19041256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 38860242 - 38860307
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||  |||||||||||||||| |||||||||| ||||||||| ||||||||    
T  38860242 ccgaagggcattttggtattttactcgtgtggcacagccatactatatgtgggaacaacaattctc 38860307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 11033526 - 11033602
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||| ||| ||||||| |||||  |||  |||||| ||||||||| |||||||||| |||||||||||||||||||    
T  11033526 cagttaactgccgaaggacattttggtattttactcatgtggcacagccatactatatgtgggaacagcaattctct 11033602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 28241893 - 28241943
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctcttcca 116  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||| ||||    
T  28241893 ttactcgtgtggcacagccatactatatgtgggaacaacaattctcatcca 28241943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 14279844 - 14279788
Alignment:
Q  50 agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  14279844 agggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 14279788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 28238138 - 28238070
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctcttc 114  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||| |||||||||||||    
T  28238138 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaagagcaattctcttc 28238070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 8574691 - 8574617
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||||||||||  |||| |||||||||| ||||| ||| || | | ||||||||| ||||||||    
T  8574691 cagtttactaccgaagggcatttgagtaatttactcgtgt-gcacagccaaaccaaatgtgggaacaacaattctc 8574617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 13837733 - 13837658
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||| |||||||||||||  ||||  ||||||||||||||| ||| |  | | ||||||||||||||||||    
T  13837733 cagtttactgccgaagggcatttttgtaaagtactcgtgtggcacagccaaagcaaatgtgggaacagcaattctc 13837658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 38853488 - 38853413
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||  |||||||||||||||| ||||||||||  || ||||| ||||||||    
T  38853488 cagttaactgccgaagggcattttggtattttactcgtgtggcacagccatactatatatgagaacaacaattctc 38853413  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 19041088 - 19041134
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  19041088 ttctgcgttctggttatgttcagatttcctcggcagttaactaccga 19041134  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 19035184 - 19035139
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||||||  || |||||| ||||||||||||||||||    
T  19035184 ttactcgtgtggcacagtcaaactatatgtgggaacagcaattctc 19035139  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28241768 - 28241816
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||| ||| |||||||| ||||| ||||||||    
T  28241768 ggttctgcgttctggttatgtccagatttcctcggcagttaactaccga 28241816  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 28876642 - 28876574
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctcttc 114  Q
    ||||||||||||| ||||  |||||||||||||||| ||| || | | ||||||||| ||||| |||||    
T  28876642 ccgaagggcattttcgtattttactcgtgtggcacagccaaacaacatgtgggaacaacaattttcttc 28876574  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28876747 - 28876699
Alignment:
Q  1 ggttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||||| |||||||||||||||| |||||||| ||||| ||| ||||    
T  28876747 ggttctgcgttctggttatgttcagatttcctcggcagttaactgccga 28876699  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 28886487 - 28886523
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaaca 102  Q
    |||||||||||||||| |||||||||| |||||||||    
T  28886487 ttactcgtgtggcacagccatactatatgtgggaaca 28886523  T

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Target: scaffold0744 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 496 - 561
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||||||| ||||  ||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  496 ccgaagggcattttcgtattttactggtgtggcacaaccatactatatgtgggaacaacaattctc 561  T

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Target: scaffold0101 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 41121 - 41195
Alignment:
Q  37 agtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||| ||| |||||||| ||||  |||  |||||||||||||||| |||||||||| ||||||||||||||||||    
T  41121 agttaactgccgaagggtattttagtattttactcgtgtggcacagccatactatatgtgggaacagcaattctc 41195  T

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Target: scaffold0494 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 11424 - 11470
Alignment:
Q  3 ttctgcattctggttatgttcagttttcctcgacagtttactaccga 49  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  11424 ttctgcgttctggttatgttcagttttcctcgacagttaactgccga 11470  T

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Target: scaffold0494; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 11517 - 11592
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||| ||| |||||||||||||  |||| |||||||||||||||| ||| || | | ||||||||| ||||||||    
T  11517 cagttaactgccgaagggcatttaggtaatttactcgtgtggcacagccaaaccaaatgtgggaacaacaattctc 11592  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 84526 - 84481
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||    
T  84526 ttactcgtgtggcacagccaaactatatgtgggaacagcaattctc 84481  T

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Target: scaffold0634 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 7427 - 7351
Alignment:
Q  36 cagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctct 112  Q
    ||||||||| ||||||||||||| |||||  |||||||||| |||| ||| || | | ||||||||| |||||||||    
T  7427 cagtttactgccgaagggcattttcgtaaagtactcgtgtgtcacagccaaaccagatgtgggaacaacaattctct 7351  T

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Target: scaffold0260 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 11775 - 11719
Alignment:
Q  50 agggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaa 106  Q
    |||| |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||    
T  11775 agggtatttgcgtaaattactggtgtggcacagccatactatatgtgggaacagcaa 11719  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 15681 - 15760
Alignment:
Q  32 tcgacagtttactaccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    ||||||||| ||| ||||||| ||||| |||||  ||||||||||||||||||| || | | |||| |||| ||||||||    
T  15681 tcgacagttaactgccgaaggacattttcgtaaagtactcgtgtggcacaaccaaaccaaatgtggaaacaccaattctc 15760  T

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Target: scaffold1606 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1606
Description:

Target: scaffold1606; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 55 - 100
Alignment:
Q  66 ttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||||| ||| |||||| ||||||||| ||||||||    
T  55 ttactcgtgtggcacagccaaactatatgtgggaacaacaattctc 100  T

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Target: scaffold0199 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 10652 - 10587
Alignment:
Q  46 ccgaagggcatttccgtaacttactcgtgtggcacaaccatactatacgtgggaacagcaattctc 111  Q
    |||||||||||||  |||| ||||||||||| |||||||| || | | ||||||||| ||||||||    
T  10652 ccgaagggcatttaagtaatttactcgtgtgacacaaccaaaccaaatgtgggaacaacaattctc 10587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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