View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_1 (Length: 674)
Name: NF12679_high_1
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 2274254 - 2273843
Alignment:
| Q |
17 |
catcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274254 |
catcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatat |
2274155 |
T |
|
| Q |
117 |
tttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactac |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274154 |
tttggtaaatttatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactac |
2274055 |
T |
|
| Q |
217 |
atcgtgtccctaaccctaaccctaaccctcnnnnnnnnnnnnnnnnnnnnnccatgataatcttatacattctgctgctatcaagtgtaatatcaagcat |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2274054 |
atcgtgtccctaaccctaaccctaaccctctcaaaaacaacaacgaaaacaccatggtaatcttatacattctggtgctatcaagtgtaatatcaagcat |
2273955 |
T |
|
| Q |
317 |
agaattgagacttgtttcaaatactgctgcagcgattatcaattttatattatgtcatatcactcttacaaggtttgtcacattcaacaagcaatagata |
416 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2273954 |
agaagtgagactcgtttcaaatactgccgcagcgattatcaatcttatattatgtcatatcactcttacaaggtttgtcacattcaacaagcaagagata |
2273855 |
T |
|
| Q |
417 |
ccacgtttaatt |
428 |
Q |
| |
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|||||||||||| |
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| T |
2273854 |
ccacgtttaatt |
2273843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 268 - 540
Target Start/End: Complemental strand, 2272442 - 2272170
Alignment:
| Q |
268 |
ccatgataatcttatacattctgctgctatcaagtgtaatatcaagcatagaattgagacttgtttcaaatactgctgcagcgattatcaattttatatt |
367 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2272442 |
ccatggtaatcttatacattctgctgctatcaagtgtaatatcaagcatagaagtgagacttgtttcaaatactgccgcagcgattatcaattttatatt |
2272343 |
T |
|
| Q |
368 |
atgtcatatcactcttacaaggtttgtcacattcaacaagcaatagataccacgtttaatttgggcattaatagtatcggcttggtttgttttcctacaa |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272342 |
atgtcatatcactcttacaaggtttgtcacattcaacaagcaagagataccacgtttaatttgggcattaatagtatcggcttggtttgttttcctacaa |
2272243 |
T |
|
| Q |
468 |
ctcactatagcattcttaacatttttatcattcgatcaagggatgaaaaaattctcatggttggtttgaataa |
540 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
2272242 |
ctcactataacattcttaacatttttatcattggatcaagggatgaaaacattctcatggttggtttgaataa |
2272170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 2272696 - 2272467
Alignment:
| Q |
17 |
catcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272696 |
catcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatat |
2272597 |
T |
|
| Q |
117 |
tttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272596 |
tttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactac |
2272497 |
T |
|
| Q |
217 |
atcgtgtccctaaccctaaccctaaccctc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
2272496 |
atcgtgtccctaaccctaaccctaaccctc |
2272467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 373328 - 373536
Alignment:
| Q |
34 |
agaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggt |
133 |
Q |
| |
|
|||||||||||| | | ||||||| || |||| ||||| ||||| |||||||||| | | |||||||||||| |||||||||||||| |||||||||| |
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| T |
373328 |
agaggtttaagaaaatagttgtgactacaatgagtttatccttggtattgattatgatcggtgcaatgaatatgtcatcatattttgggaaattcatggc |
373427 |
T |
|
| Q |
134 |
acaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaaccct |
233 |
Q |
| |
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||||| ||| |||||||||||||||| || |||||||||||| | ||||||||||||||| | ||| || ||||||||||||||||| |||||| |
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| T |
373428 |
ggaacatgacactgctgtgatgctcatactcattgctgttgttttcttatttcaaatagcacttggttatggtaggacactacatcgtgtcccaaaccct |
373527 |
T |
|
| Q |
234 |
aaccctaac |
242 |
Q |
| |
|
||||||||| |
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|
| T |
373528 |
aaccctaac |
373536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 607 - 666
Target Start/End: Complemental strand, 2272105 - 2272046
Alignment:
| Q |
607 |
gttatgtcttcgtaataattgatatctgtatggagattatattctactctctctgctcct |
666 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2272105 |
gttatgccttcgtaataattgatatctgtatggagattatattctactctctctgttcct |
2272046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 380
Target Start/End: Original strand, 373547 - 373653
Alignment:
| Q |
271 |
tgataatcttatacattctgctgctatcaagtgtaatatcaagcatagaattgagacttgtttcaaatactgctgcagcgattatcaattttatattatg |
370 |
Q |
| |
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|||||||| |||||| |||||| ||||||||||||||||||||||| ||| ||| ||||||||| || |||| ||||| |||| ||||||||| || |
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| T |
373547 |
tgataatcatatacactctgctcctatcaagtgtaatatcaagcattgaagcgagtcttgtttcacgtaatgct---gcgatcatcacttttatattctg |
373643 |
T |
|
| Q |
371 |
tcatatcact |
380 |
Q |
| |
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||||||||| |
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|
| T |
373644 |
ccatatcact |
373653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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