View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_12 (Length: 384)
Name: NF12679_high_12
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 3654658 - 3655023
Alignment:
| Q |
1 |
aaatgggtccaagaatctgacatcaaaaaccttaaatatcttcaagccattatcaaagagacacttcgtttatacccaccagcacccttaacaggaataa |
100 |
Q |
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| T |
3654658 |
aaatgggtccaagaatctgacatcaaaaaccttaaatatcttcaagccattatcaaagagacacttcgtttatacccaccagcacccttaacaggaataa |
3654757 |
T |
|
| Q |
101 |
gagaagccactgatgattgccacgtggcaggctacaaagtcaccaaaggcactcgtttgcttattaacctatggaaattgcaaagggacccactagtatg |
200 |
Q |
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| T |
3654758 |
gagaagccactgatgattgccacgtggcaggctacaaagtcaccaaaggcactcgtttgtttattaacctatggaaattgcaaagggacccactagtatg |
3654857 |
T |
|
| Q |
201 |
gtccaaccctaatgaatttcaacctgagaggtttttcaatattcatgatcaaattgataattttcagaatcaagactttggatatttgccatttagttat |
300 |
Q |
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| T |
3654858 |
gtccaaccctaataaatttcaacctgagaggtttttcaatattcatgatcaaattgataattttcagaatcaagaatttggatatttgccatttagttat |
3654957 |
T |
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| Q |
301 |
ggaagaaggtcatgtgctggtgcaacgtttggaatgcaagtcttgcatttgactttggctaggttg |
366 |
Q |
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| T |
3654958 |
ggaagaaggtcatgtgctggtgcaacgtttggaatgcaagtcttgcatttgactttggctaggttg |
3655023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 35026372 - 35026421
Alignment:
| Q |
37 |
tatcttcaagccattatcaaagagacacttcgtttatacccaccagcacc |
86 |
Q |
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| T |
35026372 |
tatcttcaagccattatcaaagaaacattgcgtctatacccaccagcacc |
35026421 |
T |
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