View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_15 (Length: 316)
Name: NF12679_high_15
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 38185717 - 38185414
Alignment:
| Q |
14 |
gacatcagagaaaagttaaaaactctttcttttaaatattttctacaacacacggtcttttattgtatcaaactcacgtggatttcatcatttcatatgt |
113 |
Q |
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| T |
38185717 |
gacattagagaaatgttaaaaactctttcttttaaatattttctacaacacacggtcttttattgtatcaaactcacgtggatttcatcatttcatatgt |
38185618 |
T |
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| Q |
114 |
gatctatttcaaacacgtgggacacatttgagtttccataaaataatgggcgttagaaaaaataatgttaaaaagataatatccaaatcacttctatacc |
213 |
Q |
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| T |
38185617 |
gatctatttcaaaaacgtgggacacatttgagtttccataaaataatgggcgttaaaaaaaataatgttaaaaaaataatatccaaatcacttctatacc |
38185518 |
T |
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| Q |
214 |
accaattatacat-agtaccacatagagtttggtcacctcgaacgtcaccacagccaccacttatataagaacacttagctcgtgctattgcattttcac |
312 |
Q |
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| T |
38185517 |
accaattatacatgagtatcacatagagtttggtcacctagaacgtcaccacggtcaccacttatataagaacacttagcttgtgctattgcattttcac |
38185418 |
T |
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| Q |
313 |
aagc |
316 |
Q |
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|||| |
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| T |
38185417 |
aagc |
38185414 |
T |
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