View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_17 (Length: 295)
Name: NF12679_high_17
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_17 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 33670090 - 33670356
Alignment:
| Q |
18 |
gaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataatattttactaattcaata |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33670090 |
gaaagccctctctactttatgcaagagataaaaagcttcgtaacggtatcttaatggattcaatatttgtatagaattataatattttactaattcaata |
33670189 |
T |
|
| Q |
118 |
gtaaaattttgaagctatactaggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtttctcctttttggaccaaagagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
33670190 |
gtaaaattttgaagctatactaggttacgtattatatctaattcttggagattattgtaatatgaaggcgcatggtttctactttttggaccaaagagaa |
33670289 |
T |
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| Q |
218 |
aagacttgtgggatcaaagtggaatctcttatccgttttcgagaagaagtttactagattaattcat |
284 |
Q |
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| T |
33670290 |
aagacatgtgggatcaaagtggaatctcttatccgttttcgagaagaagtttactagattaattcat |
33670356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 33678326 - 33678534
Alignment:
| Q |
18 |
gaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataatattttactaattcaata |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||| | ||||||||||||||| ||||||| || || |||| |
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| T |
33678326 |
gaaagccctctctactttatgcaagagagaaaa-gctttg-aacgatatctaaatggattttagatttgtatagaatta--atatttttttactt-aata |
33678420 |
T |
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| Q |
118 |
gtaaaattttgaagctatactaggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtttctcctttttggaccaaagagaa |
217 |
Q |
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| T |
33678421 |
gtaatattttgaagctatactaagttacgtattatatcagattcttggagcttattttaataggaaggagcatggtttctcctttttggaccaaagagaa |
33678520 |
T |
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| Q |
218 |
aagacttgtgggat |
231 |
Q |
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||||| |||||||| |
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| T |
33678521 |
aagacgtgtgggat |
33678534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 33698983 - 33699188
Alignment:
| Q |
18 |
gaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataata--ttttactaattcaa |
115 |
Q |
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|||||||||| ||||||||||||| ||| ||||||||| | || |||||||||||||||| || |||||| ||||||| | | |||||||||||||| |
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| T |
33698983 |
gaaagccctccctactttatgcaaaaga-aaaaagcttgg-aagggtatcttaatggatttaagatttgtttagaattgttgttatttttactaattcaa |
33699080 |
T |
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| Q |
116 |
tagtaaaattttgaagcta-----tactaggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtttctcctttttggacca |
210 |
Q |
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| |||| | ||||||||| || |||||| |||||||||| | |||||||||| ||||||||||| |||| |||| || || |||||||||||| |
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| T |
33699081 |
tggtaatctcttgaagctagaagatattaggttgcgtattatatttgattcttggagattattgtaatagaaaggagcatggtctcctctttttggacca |
33699180 |
T |
|
| Q |
211 |
aagagaaa |
218 |
Q |
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|||||||| |
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| T |
33699181 |
aagagaaa |
33699188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 33678551 - 33678603
Alignment:
| Q |
232 |
caaagtggaatctcttatccgttttcgagaagaagtttactagattaattcat |
284 |
Q |
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|||||||||||||||||||| || |||||||||||| |||||||||||||| |
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| T |
33678551 |
caaagtggaatctcttatcctttcctgagaagaagtttcctagattaattcat |
33678603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 82181 - 81981
Alignment:
| Q |
17 |
agaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataatattttactaattcaat |
116 |
Q |
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||||||||||||||||||||||||| |||||||| | |||| || ||||| |||||||||| || |||||||||||||||| | |||||||||||||||| |
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| T |
82181 |
agaaagccctctctactttatgcaaaagagaaaa-gttttg-aagggtattttaatggatttaaaatttgtatagaattatta-attttactaattcaat |
82085 |
T |
|
| Q |
117 |
agtaaaattttgaagctatac--taggttacgtattatatctaattcttggagcttattgtaatatgaaggcgcattgtttctcctttttggaccaaaga |
214 |
Q |
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||||| | ||||||||| | |||||| ||||||||| | |||||||||| ||||||||||| |||| |||| |||||| |||||||||||| ||| |
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| T |
82084 |
agtaatctcttgaagctagatcttaggttgtgtattatatttgattcttggagattattgtaatagaaaggagcatggtttcttctttttggaccagaga |
81985 |
T |
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| Q |
215 |
gaaa |
218 |
Q |
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|||| |
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| T |
81984 |
gaaa |
81981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 105550 - 105671
Alignment:
| Q |
18 |
gaaagccctctctactttatgcaagagagaaaaagctttgtaacggtatcttaatggattcaatatttgtatagaattataatattttactaattcaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||| |||| |||| |||||| || |||||||||||||||| |
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| T |
105550 |
gaaagccctctctactttatgcaagagagaaaa-gctttg-aaggatatcttaatggattcaagatttttataaaattatcattttttactaattcaata |
105647 |
T |
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| Q |
118 |
gtaaaattttgaagctatactagg |
141 |
Q |
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|||||||||||||||||| ||||| |
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| T |
105648 |
gtaaaattttgaagctatgctagg |
105671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 105681 - 105730
Alignment:
| Q |
171 |
attgtaatatgaaggcgcattgtttctcctttttggaccaaagagaaaag |
220 |
Q |
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||||||| | |||||||||| |||||||||||| |||||||||||||||| |
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| T |
105681 |
attgtaacaggaaggcgcatggtttctccttttcggaccaaagagaaaag |
105730 |
T |
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