View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_19 (Length: 292)
Name: NF12679_high_19
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 38315991 - 38316245
Alignment:
| Q |
19 |
agtatcacacccaatagtgtacacaaatgacaaacgccatgcaaggaggagtgagttattgcactagcaaaaactctatgcaatatgccttattgttata |
118 |
Q |
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| T |
38315991 |
agtatctcacccaagagtgtacacaaatgacaaacgccatgcaaggaggagtgagttcttgcactagcaaaaactctatgcaatatgcctta-------- |
38316082 |
T |
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| Q |
119 |
acacgagttgccatttaaatttttactaggacccaataattatatcttttatattttttgtttt-ataacttcatggatgttgagattacgactctgt-- |
215 |
Q |
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| T |
38316083 |
acacgtgttgccatttaaatttttactaggatccaataattatatcttttatattttttgtttttataacttcatcgatgttgagattacgactctatct |
38316182 |
T |
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| Q |
216 |
--agtctaagatgttgataataaaatgaaataaggcattaaataatattataattgaattgtg |
276 |
Q |
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| T |
38316183 |
atagtctaagatgttgataataaaatgaaataaggcattaaataatattataattgaattgtg |
38316245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 48 - 277
Target Start/End: Original strand, 2472444 - 2472676
Alignment:
| Q |
48 |
acaaacgccatgcaaggaggagtgagttattgcactagcaaaaac-tctatgcaatatgccttattgttataacacgagttgccatttaaattttt--ac |
144 |
Q |
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| T |
2472444 |
acaaacgccatgcaaggaggagtgagtccttgcactagcaaaaaaatctatgcaacataccttattgttgtaccgcgtgttgccatttaattttttttac |
2472543 |
T |
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| Q |
145 |
taggacccaataattatatcttttatattttttgttttataacttcatggatgttgagattacgactctgtagtctaagatgttgataataaaatgaaat |
244 |
Q |
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| T |
2472544 |
tagcatccaataattgtatcttttatatttttcgttttataacttcatggatgttaaaagtatgactctacattcagagatgttgataataaaatgaaat |
2472643 |
T |
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| Q |
245 |
aaggcattaaataatattataattgaattgtgt |
277 |
Q |
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| T |
2472644 |
taggcactaaataatattataattgaattgtgt |
2472676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 48 - 277
Target Start/End: Complemental strand, 4734626 - 4734395
Alignment:
| Q |
48 |
acaaacgccatgcaaggaggagtgagttattgcactagcaaaaactctatgcaatatgccttattgttataacacgagttgccatttaa-atttttacta |
146 |
Q |
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| T |
4734626 |
acaaacgccatgcaaggaggagtgagttcttgcactagcaaaaaatctatgcaacataccttatagttataccgtgagttgccatttaatctttttagta |
4734527 |
T |
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| Q |
147 |
ggacccaataattatatcttttatatttttt-gttttataacttcatggatgttgagattacgactctgtagtctaagatgttgataataaaatgaaata |
245 |
Q |
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| | ||||||||| |||||||||| |||||| ||||| ||||||||||||||||| | || |||||| | || |||||||||||||||||||||||| |
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| T |
4734526 |
gcatccaataattgtatcttttattttttttctttttacaacttcatggatgttgaaactatgactctacactcaaagatgttgataataaaatgaaatt |
4734427 |
T |
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| Q |
246 |
aggcattaaataatattataattgaattgtgt |
277 |
Q |
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| T |
4734426 |
aggcactaaataatattataactgaattgtgt |
4734395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 38359531 - 38359410
Alignment:
| Q |
48 |
acaaacgccatgcaaggaggagtgagttattgcactagcaaaaactctatgcaatatgccttattgttataacacgagttgccatttaaatttttactag |
147 |
Q |
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||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||| | | ||||||||||||||| |||||||||| |
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| T |
38359531 |
acaaacgtcgtgcaaggaggagtgagttcttgcactagcaaaaaatctatgcaatataccttgttgttacatcgcgagttgccatttaattttttactag |
38359432 |
T |
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| Q |
148 |
gacccaataattatatctttta |
169 |
Q |
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| T |
38359431 |
catccaataattgtatctttta |
38359410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 21319919 - 21319974
Alignment:
| Q |
213 |
tgtagtctaagatgttgataataaaatgaaataaggcattaaataatattataatt |
268 |
Q |
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| T |
21319919 |
tgtattctatgatgttggtaataaaatgaattaaggcaataaagaatattataatt |
21319974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 1905217 - 1905261
Alignment:
| Q |
213 |
tgtagtctaagatgttgataataaaatgaaataaggcattaaata |
257 |
Q |
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| T |
1905217 |
tgtactctaagatgatggcaataaaatgaaataaggcattaaata |
1905261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 7235794 - 7235850
Alignment:
| Q |
208 |
gactctgtagtctaagatgttgataataaaatgaaataaggcattaaataatattat |
264 |
Q |
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|||| |||| ||||||||| ||||||| |||| |||||||||| |||||||||||| |
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| T |
7235794 |
gactttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattat |
7235850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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