View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_27 (Length: 265)
Name: NF12679_high_27
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 43096358 - 43096125
Alignment:
| Q |
14 |
ttcactggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttg |
113 |
Q |
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| T |
43096358 |
ttcaccggagccaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttg |
43096259 |
T |
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| Q |
114 |
gacttgatgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtaggagattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096258 |
gacttgatgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtaggagattt |
43096159 |
T |
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| Q |
214 |
tttgtcatcttgattttgatctcttagagcatat |
247 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
43096158 |
tttgtcatcttgattttgatctcttagagcatat |
43096125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 32726593 - 32726822
Alignment:
| Q |
16 |
cactggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |
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| T |
32726593 |
cactggagacaccgcaatgctatgacgacgatcactttcggtaattttgttgaatgtgatttttgtgtcaccatcaccaccccaagaaccaactctttga |
32726692 |
T |
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| Q |
116 |
cttgatgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtaggagattttt |
215 |
Q |
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| T |
32726693 |
cttgatgatgtctttgcttttcctttagtagatgttgaaggtattg---cccttgaaacttggtttggattatttgctttttggcttgtagaggattttt |
32726789 |
T |
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| Q |
216 |
tgtcatcttga-ttttgatctcttagagcatat |
247 |
Q |
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| T |
32726790 |
tatcatctttacttttgatctcttagagcatat |
32726822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 44187461 - 44187678
Alignment:
| Q |
20 |
ggagacaccgcaatgctatgacgacgattactttcggaatttttgttgaatgtgaattttgagtcaccatcaccaccccaagaaccaactcttggacttg |
119 |
Q |
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||||||||||||||||||||||||| || |||||||| | ||||||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
44187461 |
ggagacaccgcaatgctatgacgacaatcactttcggtaattttgttgaatgtga-------gtcaccatcaccaccccaagaaccaactttttgacttg |
44187553 |
T |
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| Q |
120 |
atgatgtcttagcttttcctctagtagatgttgaaggtactgctacccttgaagcttggtttggattatttgctttttggcttgtaggagattttttgtc |
219 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
44187554 |
atgatgtctttgcttttcctttagtagatgttgaaggtactg---cccttgaaacttggtttggattatttgctttttggcttgtagaggattttttatc |
44187650 |
T |
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| Q |
220 |
atcttgattttgatctcttagagcatat |
247 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
44187651 |
atcttggctttgatctcttagagcatat |
44187678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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