View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_3 (Length: 610)
Name: NF12679_high_3
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 7631780 - 7632356
Alignment:
| Q |
17 |
atttatggaccaatgtatctgtcattaactttgaaattggtcatgttaagtcatacgattcaaagtctgtggattacctagatcaagtggacaaaatact |
116 |
Q |
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| T |
7631780 |
atttatggaccaacgtatccgtcattaactttgaaattggtcatgttaagtcatacgattcaaagtcggtggattacctagatcaagtggacaaaatact |
7631879 |
T |
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| Q |
117 |
tgacaaatctaattgcgtagtaagactctgcgttaaaacacaaggaggtatcgtcggtgtagctaaaagttagtacttttatatcttctgttgtgaagca |
216 |
Q |
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| T |
7631880 |
tcacaaatctaattgcgtagtaagaatctgcgttaaaacacaaggaggtatcgttggtgtagctaaa-gttagtacttttatatcttctgttgtgaagca |
7631978 |
T |
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| Q |
217 |
taaattacacgatcttaaaatttccctaaaatatctaaaaggtacggatgtgttacccaataggttcactgcatcacatacattaaacaagctgcattta |
316 |
Q |
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| T |
7631979 |
taaagtacacgatcttaaaatttccctaaaatatctaaaaggtacggatgtgttacccaataggttcactgcatcacatacattaaacaagctgcattta |
7632078 |
T |
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| Q |
317 |
aaatttcctcgcgctctagatattcctagtgttatttcttttcctggtctgaaaacattagtagtttcaaaggtttacttcagaaatgagaaatcggttg |
416 |
Q |
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| T |
7632079 |
aaatttcctcgcgctctagatattcctagtggtatttcttttcctggtctgaaaacattagtagtttcaaaggtttacttcagaaatgagaaatcggttg |
7632178 |
T |
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| Q |
417 |
aacgactcttcttagggtgtcctgttctacaagagttgaccttggataattgtcattggatgaatacaagggatatccattttgcaatttctacattaag |
516 |
Q |
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| T |
7632179 |
aacaactcttcttagggtgtcctgttctacaagagttgaccttggataattgtcattggatgaatataagggatatccattttgcaatttctacattaag |
7632278 |
T |
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| Q |
517 |
gaagttgaccatctattctaaccgtcgtcatctagattattataatcattctgacaaatgtacaatcacaattgatgt |
594 |
Q |
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| T |
7632279 |
gaagttgaccatctattcataccgtcgtcatctagattattataatcattccggcaaatgtacaatcacaattgatgt |
7632356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 7638475 - 7639060
Alignment:
| Q |
17 |
atttatggaccaatgtatctgtcattaactttgaaattggtcatgttaagtcatacgattcaaagtct------gtggattaccta---gatcaagtgga |
107 |
Q |
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| T |
7638475 |
atttatggactaacttatccgtctttgactttgaaattggttatgttgtgtcatatgattcaaagtcaaagcccgtggattacctcttcgatcaagtgga |
7638574 |
T |
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| Q |
108 |
caaaatacttgacaaatctaattgcgtagtaagactctgcgttaaaacacaaggaggtatcgtcggtgtagctaaaagttagtacttttatatcttctgt |
207 |
Q |
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| T |
7638575 |
caaattacttcacaaatctaattgtgtagaaagactctgcattagtacacaaagagttttcgtcggtgtaggtaaa-gttagtacttttatatcttctgt |
7638673 |
T |
|
| Q |
208 |
tgtgaagcataaattacacgatcttaaaatttccctaaaatatctaaaaggtacggatgtgttacccaataggttcactgcatcacatacattaaacaag |
307 |
Q |
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| T |
7638674 |
tgtgaagcacaaagtacaagatcttaaaatttccgtagaatatctagaaggtacgtatgtgttacccaataggttcacagcctcatatgcattaaacaag |
7638773 |
T |
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| Q |
308 |
ctgcatttaaaatttcctcgcgctctagatattcctagtgttatttcttttcctggtctgaaaacattagtagtttcaaaggtttacttcagaaatgaga |
407 |
Q |
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| T |
7638774 |
ctgcatttagaatttccttgcacactacatattcctagtggtatttgttttcctggtctgaaaacattagtagtttcaaatgttttcttttgaaatgaga |
7638873 |
T |
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| Q |
408 |
aatcggttgaacgactcttcttagggtgtcctgttctacaagagttgaccttggataattgtcattggatgaatacaagggatatccattttgcaatttc |
507 |
Q |
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| T |
7638874 |
attcggttgaactactcttcttagggtgtcctgttctacaagagttgaccttggataattgttattggatgaatataagggatatccattttgcaatttc |
7638973 |
T |
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| Q |
508 |
tacattaaggaagttgaccatctattctaaccgtcgtcatctagattattataatcattctgacaaatgtacaatcacaattgatgt |
594 |
Q |
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|||||||||||||||||||||||||||| ||| | || ||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
7638974 |
tacattaaggaagttgaccatctattctgaccattgttatctagattataataatcattccgacaaatgtacaatcacaattgatgt |
7639060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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