View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_high_34 (Length: 236)

Name: NF12679_high_34
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_high_34
NF12679_high_34
[»] chr5 (7 HSPs)
chr5 (13-236)||(5005682-5005902)
chr5 (81-147)||(17405568-17405634)
chr5 (82-157)||(31669024-31669100)
chr5 (85-157)||(16172983-16173056)
chr5 (82-205)||(19373239-19373363)
chr5 (89-155)||(21040542-21040609)
chr5 (107-157)||(40330651-40330702)
[»] chr1 (11 HSPs)
chr1 (80-204)||(34228872-34228997)
chr1 (79-150)||(37046982-37047054)
chr1 (81-205)||(40257398-40257524)
chr1 (82-203)||(15581095-15581217)
chr1 (81-147)||(9570643-9570710)
chr1 (82-207)||(19940821-19940948)
chr1 (81-150)||(4824970-4825041)
chr1 (97-199)||(6127944-6128047)
chr1 (80-164)||(51814492-51814578)
chr1 (81-155)||(46146268-46146344)
chr1 (82-157)||(18928332-18928408)
[»] chr7 (6 HSPs)
chr7 (82-199)||(48125132-48125250)
chr7 (131-199)||(24444812-24444880)
chr7 (80-205)||(35328826-35328952)
chr7 (82-157)||(48039646-48039723)
chr7 (112-156)||(28646996-28647041)
chr7 (80-204)||(41487360-41487483)
[»] chr3 (15 HSPs)
chr3 (103-202)||(44069779-44069880)
chr3 (82-130)||(40286885-40286933)
chr3 (84-157)||(10682943-10683017)
chr3 (82-150)||(47079701-47079770)
chr3 (81-156)||(34844370-34844446)
chr3 (84-151)||(42799753-42799821)
chr3 (83-157)||(18316498-18316573)
chr3 (105-150)||(26158834-26158880)
chr3 (80-157)||(40268487-40268565)
chr3 (82-205)||(51766896-51767020)
chr3 (85-157)||(15034348-15034421)
chr3 (166-207)||(16150396-16150437)
chr3 (79-204)||(10499061-10499188)
chr3 (82-199)||(16212929-16213048)
chr3 (82-157)||(53863867-53863943)
[»] chr4 (10 HSPs)
chr4 (99-199)||(47183339-47183440)
chr4 (81-191)||(21344816-21344927)
chr4 (79-199)||(29195092-29195213)
chr4 (76-151)||(6606052-6606128)
chr4 (81-199)||(25414172-25414291)
chr4 (135-164)||(4483293-4483322)
chr4 (82-172)||(8325363-8325455)
chr4 (82-157)||(20608922-20608999)
chr4 (86-157)||(37980147-37980219)
chr4 (82-157)||(56409951-56410027)
[»] chr6 (5 HSPs)
chr6 (87-205)||(6691502-6691621)
chr6 (86-157)||(3869700-3869772)
chr6 (98-172)||(7389022-7389098)
chr6 (106-156)||(10377732-10377783)
chr6 (82-164)||(30127400-30127484)
[»] chr2 (5 HSPs)
chr2 (82-128)||(36683555-36683601)
chr2 (81-157)||(3697399-3697476)
chr2 (82-157)||(16525178-16525254)
chr2 (82-157)||(26482093-26482169)
chr2 (82-157)||(342395-342471)
[»] chr8 (6 HSPs)
chr8 (81-205)||(11793472-11793598)
chr8 (82-205)||(26688865-26688990)
chr8 (81-146)||(22268944-22269010)
chr8 (112-156)||(39317047-39317092)
chr8 (82-157)||(43533718-43533795)
chr8 (82-157)||(6530807-6530883)
[»] scaffold0012 (1 HSPs)
scaffold0012 (83-146)||(240896-240960)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 5005682 - 5005902
Alignment:
Q  13 attatgattactctttgatacctattttaccagatattatggaagcagaagttattttagataatgcaaaacccacttgggttagtctgatggtgttagc 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5005682 attatgattactctttga-acctattttaccagatattatggaagcagaagttattttagataatgcaaaacccacttgggttaatctgatggtgttagc 5005780  T
Q  113 ttgagatcttggagtgtgttctctcaaggtctcaggttcaattctttccggtatcaattttgatagtctagtttggcttcttcaaaagaaaaatagataa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||  ||||    
T  5005781 ttgagatcttggagtgtgttctctcaaggtctcaggttcaattatttctggtatcaattatgatagtctagtttggcttcttcaaaagaaaaat--ataa 5005878  T
Q  213 tgcaaacacctacaaatatagttt 236  Q
    ||||||||||||||||||||||||    
T  5005879 tgcaaacacctacaaatatagttt 5005902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 17405568 - 17405634
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttctctcaaggtctcag 147  Q
    ||||||||||||||| ||||| |||||||||||| ||| ||| || |||| ||||||||||||||||    
T  17405568 aaacccacttgggttggtctggtggtgttagcttaagacctttgaatgtgctctctcaaggtctcag 17405634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 31669100 - 31669024
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    |||||||||||||| ||||||||||||| ||||| || |||||||| || | |||||||||||| |||||| |||||    
T  31669100 aacccacttgggttggtctgatggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgattct 31669024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 16173056 - 16172983
Alignment:
Q  85 ccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    ||||||||||| | ||| | ||||| |||||||| ||||||||||| | ||||||||||||||||||| |||||    
T  16173056 ccacttgggttggcctggtagtgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattct 16172983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 19373239 - 19373363
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgatagtc 180  Q
    |||||||||| ||| | ||| ||||||| |||||||| ||||||||||| | |||||||||| | |||||| ||||| || | | ||||||| | | |      
T  19373239 aacccacttgagttggcctggtggtgttggcttgagaccttggagtgtgctactctcaaggttttaggttcgattctatctgatgtcaatttcggtgggt 19373338  T
Q  181 tagtttggcttcttcaaaagaaaaa 205  Q
    || |||||||||||||||| |||||    
T  19373339 tactttggcttcttcaaaataaaaa 19373363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 21040609 - 21040542
Alignment:
Q  89 ttgggttagtctgatggtgttagcttgagatcttggagtgtgtt-ctctcaaggtctcaggttcaatt 155  Q
    |||||||||| |||| ||| | | |||||||||| ||||||||| |||||||||| ||||||||||||    
T  21040609 ttgggttagtttgatagtgctggtttgagatcttagagtgtgtttctctcaaggtttcaggttcaatt 21040542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 40330651 - 40330702
Alignment:
Q  107 gttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||||    
T  40330651 gttagcttgagatcttggagtttgctcctctcaaggtctcaagttcaattct 40330702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 34228872 - 34228997
Alignment:
Q  80 aaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattctttccggtatcaattttgatag 178  Q
    |||||||||||| ||| ||||| ||||||| ||||| || || ||||||||||| |||||||||||||||||  ||||| ||||||  |||||||| | |    
T  34228872 aaaacccacttgagttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctcaggttggattctctccggtgccaattttggtgg 34228971  T
Q  179 tctagtttggcttcttcaaaagaaaa 204  Q
     |||||||||||| ||| ||| ||||    
T  34228972 gctagtttggcttattctaaaaaaaa 34228997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 37046982 - 37047054
Alignment:
Q  79 caaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggtt 150  Q
    ||||||||||||||||| ||||| ||||||| ||||| || ||||||||||| | ||||||||||||||||||    
T  37046982 caaaacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 37047054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 40257398 - 40257524
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcaggttcaattctttccggtatcaattttgatag 178  Q
    ||||||||||||||| | ||| |||| || |||||||| || |||||||| ||   ||| |||||||| |||||||||| |||||| ||||||| | | |    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgg 40257497  T
Q  179 tctagtttggcttcttcaaaagaaaaa 205  Q
     ||||||| |||||||||||| |||||    
T  40257498 gctagtttagcttcttcaaaaaaaaaa 40257524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 15581217 - 15581095
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgatagtc 180  Q
    |||||||||||||| | ||| ||||||| ||||| || ||||||||||| | |||| ||||||||||||||||||||  |||||    |||| | | | |    
T  15581217 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctcaggttcaattctccccggtgctgatttcggtgggc 15581118  T
Q  181 tagtttggcttcttcaaaagaaa 203  Q
    ||||||||||| |||||||||||    
T  15581117 tagtttggcttattcaaaagaaa 15581095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 9570643 - 9570710
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcag 147  Q
    ||||||||||||||| | ||||||||||| |||||||| ||||||||||| |||  |||||||||||||    
T  9570643 aaacccacttgggttgg-ctgatggtgttggcttgagaccttggagtgtgctcttcctcaaggtctcag 9570710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 19940948 - 19940821
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc--tctcaaggtctcaggttcaattctttccggtatcaattttgatagt 179  Q
    |||||||||||||| ||||| ||||||||||||| |  ||||||||||| ||   || |||||||||||||  ||||| ||||||  ||||||   | |     
T  19940948 aacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctctccggtgccaatttatgtggg 19940849  T
Q  180 ctagtttggcttcttcaaaagaaaaata 207  Q
    || |||| |||||||||||| |||||||    
T  19940848 ctggtttagcttcttcaaaataaaaata 19940821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 4824970 - 4825041
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctc-tcaaggtctcaggtt 150  Q
    |||| |||||||||| ||||||||||||| ||||| || ||||||||||| | ||| |||||||||||||||    
T  4824970 aaacacacttgggttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtctcaggtt 4825041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 6128047 - 6127944
Alignment:
Q  97 gtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattctttccggtatcaattttgatagtctagtttggcttcttc 195  Q
    ||||| ||||||| | ||| || ||||||| ||| || ||||||||||||| |||| |||||  |||||  |||||||| | | ||||||||||||||||    
T  6128047 gtctggtggtgttggtttgggaccttggagcgtgctcctctcaaggtctcaagttcgattctccccggtgccaattttggtgggctagtttggcttcttc 6127948  T
Q  196 aaaa 199  Q
    ||||    
T  6127947 aaaa 6127944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 51814492 - 51814578
Alignment:
Q  80 aaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc--tctcaaggtctcaggttcaattctttccggt 164  Q
    |||||||||||||||| | |||||||| ||  ||||||||||  ||||||| ||   ||||||||||||||||| ||||| ||||||    
T  51814492 aaaacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggt 51814578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 46146344 - 46146268
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttctc--tcaaggtctcaggttcaatt 155  Q
    ||||||||||||||| ||| |||||| |||||||| ||||| ||| |||| || |  |||| |||||||||||||||    
T  46146344 aaacccacttgggttggtccgatggtattagcttgggatctgggaatgtgctccccttcaaagtctcaggttcaatt 46146268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 18928332 - 18928408
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattct 157  Q
    |||||| ||| |||||||   ||||||| |||||||| |||  |||||| || ||||||||||||||||||||||||    
T  18928332 aacccagttgagttagtcaagtggtgttggcttgagaccttaaagtgtgctcctctcaaggtctcaggttcaattct 18928408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 48125250 - 48125132
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgatagtc 180  Q
    |||||||||||||| ||||| ||||||| ||||| || ||||||||||| | |||  |||||||||||||||||| |  |||||  |||||| | | | |    
T  48125250 aacccacttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggttcaattttccccggtgccaatttcggtgggc 48125151  T
Q  181 tagtttggcttcttcaaaa 199  Q
    |||||||||||||||||||    
T  48125150 tagtttggcttcttcaaaa 48125132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 24444880 - 24444812
Alignment:
Q  131 ttctctcaaggtctcaggttcaattctttccggtatcaattttgatagtctagtttggcttcttcaaaa 199  Q
    ||||||||| |||| |||||| |||||||||||| ||||||||||| | ||||||||| ||||| ||||    
T  24444880 ttctctcaaagtcttaggttctattctttccggtgtcaattttgatgggctagtttggtttcttaaaaa 24444812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 35328952 - 35328826
Alignment:
Q  80 aaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgatag 178  Q
    |||||||||||||||| | ||| ||||||| |||||  | ||| ||||||| |||||||||||| | |||||  ||||||||| ||  |||||||  | |    
T  35328952 aaaacccacttgggttggcctggtggtgttggcttggaaccttcgagtgtgcttctctcaaggttttaggtttgattctttccagtgccaattttagtgg 35328853  T
Q  179 tctagtttggcttcttcaaaagaaaaa 205  Q
     ||||||||||||||||  ||||||||    
T  35328852 gctagtttggcttcttcggaagaaaaa 35328826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 48039723 - 48039646
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc--tctcaaggtctcaggttcaattct 157  Q
    |||||||||||||| | ||| ||||||| ||||| ||||||||||| || ||  || ||||||||||||||| |||||    
T  48039723 aacccacttgggttggcctggtggtgttggcttgcgatcttggagtatgctccttcgcaaggtctcaggttctattct 48039646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 28646996 - 28647041
Alignment:
Q  112 cttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattc 156  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||    
T  28646996 cttgggatcttggagtgtgcttctctcaaggtctcaggttcgattc 28647041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 41487360 - 41487483
Alignment:
Q  80 aaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttctc-tcaaggtctcaggttcaattctttccggtatcaattttgatag 178  Q
    |||||||||||||||| | ||| |||| || ||||| || ||||| | |||||||| |||||||||||||||| |||||| |||||  |||||| | | |    
T  41487360 aaaacccacttgggttggcctggtggtattggcttggga-cttgg-gagtgttctcctcaaggtctcaggttcgattcttcccggtgccaatttaggtgg 41487457  T
Q  179 tctagtttggcttcttcaaaagaaaa 204  Q
     ||| ||| |||||||||||| ||||    
T  41487458 gctaatttagcttcttcaaaaaaaaa 41487483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 44069779 - 44069880
Alignment:
Q  103 tggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcaggttcaattctttccggtatcaattttgatagtctagtttggcttcttcaaaag 200  Q
    ||||||| |||||||||||||||||||| ||   ||||||||||||||||  ||||||||||||  |||||| | | | ||||||| |||||||||||||    
T  44069779 tggtgttggcttgagatcttggagtgtgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttcaaaag 44069878  T
Q  201 aa 202  Q
    ||    
T  44069879 aa 44069880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 40286933 - 40286885
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg 130  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  40286933 aacccacttgggttggtctggtggtgttcgcttgagatcttggagtgtg 40286885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 10683017 - 10682943
Alignment:
Q  84 cccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    ||||||||||||  |||  |||| || |||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  10683017 cccacttgggttgatctagtggtattggcttgagaccttggagtgtgcttctctcaaagtctcaggttcaattct 10682943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 47079701 - 47079770
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgtt-ctctcaaggtctcaggtt 150  Q
    |||||||||||||| ||||| ||||||| ||||| ||||||||| |||||| |||| ||||||| |||||    
T  47079701 aacccacttgggttggtctggtggtgttggcttgggatcttggaatgtgttcctcttaaggtcttaggtt 47079770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 34844370 - 34844446
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattc 156  Q
    |||||||||||||||   ||| || |||| |||||||| ||||||||||| | ||||||||||||||||||| ||||    
T  34844370 aaacccacttgggttgccctggtgttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattc 34844446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 42799821 - 42799753
Alignment:
Q  84 cccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttc 151  Q
    |||||||||||| | ||| ||||||| ||||| || ||||||||||| | |||||||||||||||||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttc 42799753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 18316573 - 18316498
Alignment:
Q  83 acccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    ||||||||||||| ||||| ||||| | ||||| || ||||||||||| | |||||||||||| |||||| |||||    
T  18316573 acccacttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgattct 18316498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 26158834 - 26158880
Alignment:
Q  105 gtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggtt 150  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||    
T  26158834 gtgttggcttgagatcttggagtgtgctcctctcaaggtctcaggtt 26158880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 40268487 - 40268565
Alignment:
Q  80 aaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    |||||||||||||||| | ||| ||||||| ||||| || ||||||||| | | |||| |||||||||||||| |||||    
T  40268487 aaaacccacttgggtttgcctggtggtgttggcttgggaccttggagtgggctcctcttaaggtctcaggttcgattct 40268565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 51766896 - 51767020
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcaggttcaattctttccggtatcaattttgatagt 179  Q
    |||||||||||||||||| |||||| ||  |||| ||||| |||||||| |||  |||||||| |||| ||| ||||| |||||||  ||||| ||| ||    
T  51766896 aacccacttgggttagtccgatggtattgacttg-gatctgggagtgtgctcttcctcaaggtttcagattcgattctctccggtactaatttggatggt 51766994  T
Q  180 ctagtttggcttcttcaaaagaaaaa 205  Q
    ||  ||| ||||||| |||| |||||    
T  51766995 ctgatttagcttcttaaaaaaaaaaa 51767020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 15034348 - 15034421
Alignment:
Q  85 ccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattct 157  Q
    ||||||||||| | ||| |||||||  |||| || ||||||| ||| || ||||||||||||||||||||||||    
T  15034348 ccacttgggttggcctggtggtgttgccttgggaccttggagggtgatcctctcaaggtctcaggttcaattct 15034421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 16150396 - 16150437
Alignment:
Q  166 tcaattttgatagtctagtttggcttcttcaaaagaaaaata 207  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  16150396 tcaattttgatggtctagtttgacttcttcaaaacaaaaata 16150437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 10499188 - 10499061
Alignment:
Q  79 caaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcaggttcaattctttccggtatcaattttgat 176  Q
    ||||||||||||||||| | ||| |||| || ||||| ||||| ||||| || |||  ||  ||||||||||||| ||||| |||| | ||||||| | |    
T  10499188 caaaacccacttgggttggcctggtggtattggcttgggatctgggagtctgctcttccttgaggtctcaggttcgattctctccgatgtcaatttgggt 10499089  T
Q  177 agtctagtttggcttcttcaaaagaaaa 204  Q
     | ||| ||| |||||||||||| ||||    
T  10499088 gggctaatttagcttcttcaaaaaaaaa 10499061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 16213048 - 16212929
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcaggttcaattctttccggtatcaattttgatagt 179  Q
    |||||||||||||| |||| ||| ||||  |||||||  | |||||||| ||   || ||||||||| |||||||||  |||||||||||||| ||| |     
T  16213048 aacccacttgggttggtctaatgatgttgccttgagacttgggagtgtgctcctccttaaggtctcaagttcaattcactccggtatcaatttggatgga 16212949  T
Q  180 ctagtttggcttcttcaaaa 199  Q
    ||| ||| ||||||| ||||    
T  16212948 ctaatttagcttcttaaaaa 16212929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 53863943 - 53863867
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattct 157  Q
    ||||||||||||||   ||| || |||| ||||| || ||||||||||| || ||||||||||| ||||||||||||    
T  53863943 aacccacttgggttgtcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattct 53863867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 47183339 - 47183440
Alignment:
Q  99 ctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattctttccggtatcaattttgatagtctagtttggcttcttcaa 197  Q
    ||||||||||| |||||||| ||||||||||| || ||||||| |||||||||| ||| || ||||| ||||||| | | | | ||||||||||||||||    
T  47183339 ctgatggtgttggcttgagaccttggagtgtgatcctctcaagatctcaggttcgatttttcccggtgtcaatttcggtggacaagtttggcttcttcaa 47183438  T
Q  198 aa 199  Q
    ||    
T  47183439 aa 47183440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 21344816 - 21344927
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgatagt 179  Q
    ||||||||||||||| | |||||| |||| ||||| || ||||||||||| | |||||||||||||| ||||||||||  || || ||||||| | | |     
T  21344816 aaacccacttgggttggcctgatgatgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcaattctccccagtgtcaatttaggtggg 21344915  T
Q  180 ctagtttggctt 191  Q
    ||||||||||||    
T  21344916 ctagtttggctt 21344927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 29195092 - 29195213
Alignment:
Q  79 caaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgata 177  Q
    ||||||||||||||||| | ||| ||||||| ||||| || ||||||||||| | ||||||||||| || |||| ||||| ||   |  |||||||| |     
T  29195092 caaaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattttggtt 29195191  T
Q  178 gtctagtttggcttcttcaaaa 199  Q
    | ||||||| ||||||||||||    
T  29195192 ggctagtttagcttcttcaaaa 29195213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 6606052 - 6606128
Alignment:
Q  76 atgcaaaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttc 151  Q
    |||| ||||||||||||||| ||||||||||||| ||||| || ||||||| ||| | || ||||| ||||||||||    
T  6606052 atgctaaacccacttgggttggtctgatggtgttggcttgggaccttggagagtgatcctttcaagatctcaggttc 6606128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 25414291 - 25414172
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattctttccggtatcaattttgatagt 179  Q
    ||||| ||||||||| | ||  ||||||| |||||||| ||||||||||| | ||||||| ||||||||||  |||||  |||||  |||||||| | |     
T  25414291 aaaccaacttgggttggccttctggtgttggcttgagaccttggagtgtgctcctctcaaagtctcaggtttgattctccccggtgccaattttggtggg 25414192  T
Q  180 ctagtttggcttcttcaaaa 199  Q
     |||||||||||||| ||||    
T  25414191 ttagtttggcttcttaaaaa 25414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 4483322 - 4483293
Alignment:
Q  135 ctcaaggtctcaggttcaattctttccggt 164  Q
    ||||||||||||||||||||||||||||||    
T  4483322 ctcaaggtctcaggttcaattctttccggt 4483293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 8325455 - 8325363
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc--tctcaaggtctcaggttcaattctttccggtatcaattt 172  Q
    |||||||||||||| | | | ||||||| |||||||| ||||||||||| ||   |||||||||| |||||| |||||  ||||| |||||||    
T  8325455 aacccacttgggttgggccggtggtgttggcttgagaccttggagtgtgctcatcctcaaggtcttaggttcgattctccccggtgtcaattt 8325363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 20608922 - 20608999
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctc-tcaaggtctcaggttcaattct 157  Q
    ||||||||||||||  ||||||||| || ||||||||||  |||||||| ||||| ||||||||||| |||| |||||    
T  20608922 aacccacttgggttgatctgatggtattggcttgagatccgggagtgtgtttctcatcaaggtctcaagttcgattct 20608999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 37980219 - 37980147
Alignment:
Q  86 cacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattct 157  Q
    |||||||||| | ||| || |||| ||||| || ||||||||||| || |||||||||||||||||| |||||    
T  37980219 cacttgggttggcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattct 37980147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 56409951 - 56410027
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattct 157  Q
    |||||||||||| | | ||| || |||| ||||| || ||||||||||| || |||||||||||||||||| |||||    
T  56409951 aacccacttgggctggcctggtgctgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattct 56410027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 6691621 - 6691502
Alignment:
Q  87 acttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattctttccggtatcaattttgatagtctagtt 185  Q
    ||||||||| | ||| |||||||  ||| ||| ||||||||||| || |||||||||||||||||| ||||| ||||||  |||||| | |||  |||||    
T  6691621 acttgggttggcctggtggtgttgactttagaccttggagtgtgctcctctcaaggtctcaggttcgattctctccggtgccaatttcggtagggtagtt 6691522  T
Q  186 tggcttcttcaaaagaaaaa 205  Q
    |||||| ||||||| |||||    
T  6691521 tggcttattcaaaaaaaaaa 6691502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 3869700 - 3869772
Alignment:
Q  86 cacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    |||||||||| | ||||||||||| |||||||||||| ||||||| |||| ||||||||||| |||| |||||    
T  3869700 cacttgggttggcctgatggtgttggcttgagatcttcgagtgtgcttctatcaaggtctcatgttcgattct 3869772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 7389098 - 7389022
Alignment:
Q  98 tctgatggtgttagcttgagatcttggagtgtgttct--ctcaaggtctcaggttcaattctttccggtatcaattt 172  Q
    |||| |||| ||||||| ||||||| | |||||||||  |||||||||||||||||||||||  ||||| |||||||    
T  7389098 tctggtggtattagcttcagatcttagggtgtgttctttctcaaggtctcaggttcaattctccccggtgtcaattt 7389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 10377732 - 10377783
Alignment:
Q  106 tgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattc 156  Q
    |||| |||||||||||||||||||| || | |||||||||||||||||||||    
T  10377732 tgttggcttgagatcttggagtgtgctcatgtcaaggtctcaggttcaattc 10377783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 30127400 - 30127484
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tct-caaggtctcaggttcaattctttccggt 164  Q
    |||||||||||||| ||||| |||| || ||||| | ||| |||||||| || ||| | ||||||||||||| ||||||||||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctcaggttcgattctttccggt 30127484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 36683601 - 36683555
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtg 128  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||    
T  36683601 aacccacttgggttagtctgatggtgttggcttgagatcttagagtg 36683555  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 3697476 - 3697399
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    ||||||||||||||| |||||||||| || ||||| || ||||||| ||| | ||||||||||||| ||||| |||||    
T  3697476 aaacccacttgggttggtctgatggtattggcttgggaccttggagagtgctcctctcaaggtctctggttcgattct 3697399  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 16525178 - 16525254
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    |||||||||||||| | ||||||||||| ||||| ||  ||||||||||   ||||||||||||||||||| |||||    
T  16525178 aacccacttgggttggcctgatggtgttggcttgggacgttggagtgtgcgactctcaaggtctcaggttcgattct 16525254  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 26482093 - 26482169
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    ||||||||| |||| | ||||||||||| ||||| || || |||||||| | ||||||||||||||||||| |||||    
T  26482093 aacccacttaggttggcctgatggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaggttcgattct 26482169  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 342395 - 342471
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctcaggttcaattct 157  Q
    |||||||||||||| | ||| ||||||| ||||| || ||||||||||  || || |||||||||| ||||||||||    
T  342395 aacccacttgggttggcctggtggtgttggcttgtgaccttggagtgtactcatcgcaaggtctcaagttcaattct 342471  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 11793598 - 11793472
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc--tctcaaggtctcaggttcaattctttccggtatcaattttgatag 178  Q
    ||||||||||||||| ||||  ||||||| ||||| || ||||||||||| ||   |||||||||| |||||  |||||| |||||  |||||| | | |    
T  11793598 aaacccacttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgg 11793499  T
Q  179 tctagtttggcttcttcaaaagaaaaa 205  Q
     ||||||| |||||||||||| |||||    
T  11793498 gctagtttagcttcttcaaaaaaaaaa 11793472  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 26688865 - 26688990
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc--tctcaaggtctcaggttcaattctttccggtatcaattttgatagt 179  Q
    |||||||||||||| | ||| ||||||| ||||| || ||||||||||| ||   |||||||||||||||||| ||||| |  || ||||||| | | |     
T  26688865 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttcagttcttcctagtgtcaatttgggtggg 26688964  T
Q  180 ctagtttggcttcttcaaaagaaaaa 205  Q
    ||||||| ||||||| |||| |||||    
T  26688965 ctagtttagcttcttaaaaaaaaaaa 26688990  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 22269010 - 22268944
Alignment:
Q  81 aaacccacttgggttagtctgatggtgttagcttgagatcttggagtgtgttc-tctcaaggtctca 146  Q
    ||||||||||||||| | ||| ||||||| ||||| || ||||||||||| || |||||||||||||    
T  22269010 aaacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcttctcaaggtctca 22268944  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 39317047 - 39317092
Alignment:
Q  112 cttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattc 156  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||    
T  39317047 cttgagatattggagtgtgcttctctcaagctctcaggttcaattc 39317092  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 43533795 - 43533718
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttct-ctcaaggtctcaggttcaattct 157  Q
    |||||||||||||   |||| ||||||| |||||||| ||||||||||| || | |||||||||||| ||||||||||    
T  43533795 aacccacttgggtggatctggtggtgttggcttgagaccttggagtgtgcttatcctcaaggtctcacgttcaattct 43533718  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 6530807 - 6530883
Alignment:
Q  82 aacccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctcaggttcaattct 157  Q
    |||||||||||||| | ||| ||||||| ||||| || || |||||||| | ||||||| ||||||||||| |||||    
T  6530807 aacccacttgggttggcctggtggtgttggcttgggacctaggagtgtgctcctctcaatgtctcaggttcgattct 6530883  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 240960 - 240896
Alignment:
Q  83 acccacttgggttagtctgatggtgttagcttgagatcttggagtgtg-ttctctcaaggtctca 146  Q
    |||||||| |||| ||||||||||||| | ||| ||||||||||| || | ||||||||||||||    
T  240960 acccactttggttggtctgatggtgttggtttgggatcttggagtatgctcctctcaaggtctca 240896  T

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