View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_high_5 (Length: 504)
Name: NF12679_high_5
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 43652975 - 43653234
Alignment:
| Q |
18 |
agaagtaccaaaaggagaggcatgcctaatttaaacannnnnnnaacaatttcaactaataaaccaataacaacaacaatgcagaaaaatatggtatatt |
117 |
Q |
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| T |
43652975 |
agaagtcccaaaaggagaggcatgcctaatttaaacatttttttaacaatttcaactaataaaccaataacaacaacaatgcagaaaaatatggtatatt |
43653074 |
T |
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| Q |
118 |
atcaaggagaagttcgatacatttcaaagagaacaacactaggaaaataaaatgttgtcaattttcaccatttccagaaaacattagaaccacacttgta |
217 |
Q |
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| T |
43653075 |
atcaaggagaagttcgatacatttcaaagagaacaacactaggaaaataaaatgttgtcaattttcaccatttccagaaaacattagaaccacacttgta |
43653174 |
T |
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| Q |
218 |
tttgtcctttccttcacattcaagttccaaatcttctgtaatgaatggtactttctgcgt |
277 |
Q |
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| T |
43653175 |
tttgtcctttccttcacattcaagttccaaatcttctgtaatgaatggtactttctgcgt |
43653234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 345 - 492
Target Start/End: Original strand, 43653302 - 43653449
Alignment:
| Q |
345 |
tagtgaaacaaaagatgtttaaggttagagtcagaccttctgtttagcaagatcttggcaaccagtgaaattctcagggaacttgcaagtaccaaattgc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43653302 |
tagtgaaacaaaagatgtttaaggttagagtcagaccttctgtttagcaagatcttggcaaccggtgaaattctcagggaacttgcaagtaccaaattgc |
43653401 |
T |
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| Q |
445 |
actgtatatgctcttgcaaaatttgctccactagtggctaacctcttc |
492 |
Q |
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| T |
43653402 |
actgtatatgctcttgcaaaatttgctccactagtggctaacctcttc |
43653449 |
T |
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