View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_high_6 (Length: 502)

Name: NF12679_high_6
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_high_6
NF12679_high_6
[»] chr7 (14 HSPs)
chr7 (6-502)||(5071488-5071984)
chr7 (183-314)||(21985948-21986080)
chr7 (181-422)||(24264247-24264498)
chr7 (183-330)||(9188071-9188219)
chr7 (216-314)||(24272859-24272962)
chr7 (181-422)||(16881839-16882090)
chr7 (181-417)||(12404887-12405133)
chr7 (183-315)||(18410685-18410818)
chr7 (234-422)||(21641602-21641800)
chr7 (181-274)||(3321917-3322010)
chr7 (181-274)||(7073010-7073103)
chr7 (371-422)||(18410569-18410620)
chr7 (181-272)||(25403616-25403707)
chr7 (181-272)||(25408373-25408464)
[»] chr2 (13 HSPs)
chr2 (183-422)||(39484669-39484918)
chr2 (183-477)||(39486137-39486441)
chr2 (234-314)||(19346307-19346388)
chr2 (181-274)||(20051890-20051983)
chr2 (234-314)||(31057987-31058068)
chr2 (181-274)||(17935043-17935136)
chr2 (183-314)||(39685208-39685340)
chr2 (183-274)||(2739166-2739257)
chr2 (371-422)||(19346190-19346241)
chr2 (217-268)||(31134544-31134595)
chr2 (371-422)||(31134708-31134759)
chr2 (181-274)||(22714363-22714456)
chr2 (371-435)||(31057857-31057921)
[»] scaffold0259 (1 HSPs)
scaffold0259 (234-422)||(362-560)
[»] chr5 (16 HSPs)
chr5 (183-306)||(24558510-24558634)
chr5 (183-306)||(24599542-24599666)
chr5 (234-422)||(33769951-33770149)
chr5 (181-312)||(28805646-28805778)
chr5 (181-314)||(27446852-27446986)
chr5 (181-422)||(37559517-37559768)
chr5 (234-279)||(28834124-28834169)
chr5 (234-422)||(31399969-31400167)
chr5 (181-314)||(43594150-43594284)
chr5 (181-314)||(43626944-43627078)
chr5 (371-422)||(27446735-27446786)
chr5 (371-422)||(28805846-28805897)
chr5 (371-422)||(43594033-43594084)
chr5 (371-422)||(43626827-43626878)
chr5 (181-274)||(25450716-25450809)
chr5 (387-423)||(30102725-30102761)
[»] chr4 (11 HSPs)
chr4 (183-314)||(3791059-3791191)
chr4 (183-330)||(16626918-16627066)
chr4 (181-422)||(18857488-18857739)
chr4 (183-314)||(5144937-5145069)
chr4 (181-330)||(9227325-9227475)
chr4 (181-274)||(15315276-15315369)
chr4 (371-429)||(16627116-16627174)
chr4 (181-274)||(4568302-4568395)
chr4 (369-426)||(5144818-5144875)
chr4 (371-417)||(3791257-3791303)
chr4 (181-274)||(16637120-16637213)
[»] chr8 (14 HSPs)
chr8 (216-314)||(26401309-26401408)
chr8 (181-422)||(10687188-10687439)
chr8 (181-422)||(35742301-35742552)
chr8 (234-422)||(18868647-18868845)
chr8 (183-314)||(26298411-26298543)
chr8 (183-314)||(26311668-26311800)
chr8 (234-422)||(33035910-33036108)
chr8 (181-274)||(4814355-4814448)
chr8 (181-274)||(28893723-28893816)
chr8 (183-314)||(28330856-28330988)
chr8 (371-422)||(26298294-26298345)
chr8 (371-422)||(26311551-26311602)
chr8 (181-274)||(16754389-16754482)
chr8 (181-274)||(21040389-21040482)
[»] chr3 (13 HSPs)
chr3 (181-422)||(8514006-8514257)
chr3 (181-422)||(22171232-22171483)
chr3 (181-422)||(32477252-32477503)
chr3 (216-422)||(1307783-1307999)
chr3 (216-330)||(3326485-3326600)
chr3 (234-422)||(16256981-16257179)
chr3 (181-274)||(54191467-54191560)
chr3 (181-422)||(2675144-2675395)
chr3 (181-274)||(10095935-10096028)
chr3 (181-274)||(10202821-10202914)
chr3 (181-274)||(10899968-10900061)
chr3 (181-274)||(16460423-16460516)
chr3 (181-265)||(10609911-10609995)
[»] chr1 (7 HSPs)
chr1 (216-312)||(47701996-47702093)
chr1 (216-314)||(13599896-13599995)
chr1 (234-422)||(41395163-41395361)
chr1 (181-274)||(2396384-2396477)
chr1 (181-274)||(9524687-9524780)
chr1 (371-422)||(47101131-47101182)
chr1 (372-422)||(47702162-47702212)
[»] scaffold0078 (2 HSPs)
scaffold0078 (183-306)||(34076-34200)
scaffold0078 (371-422)||(33951-34002)
[»] scaffold0006 (1 HSPs)
scaffold0006 (216-314)||(7693-7792)
[»] scaffold0197 (1 HSPs)
scaffold0197 (181-422)||(17233-17484)
[»] chr6 (8 HSPs)
chr6 (181-422)||(14740496-14740747)
chr6 (183-279)||(24434240-24434336)
chr6 (181-274)||(13881698-13881791)
chr6 (181-274)||(17691981-17692074)
chr6 (234-330)||(33334053-33334150)
chr6 (181-274)||(35203192-35203285)
chr6 (371-477)||(33334200-33334306)
chr6 (181-274)||(25944628-25944721)
[»] scaffold0209 (1 HSPs)
scaffold0209 (182-274)||(272-364)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 6 - 502
Target Start/End: Complemental strand, 5071984 - 5071488
Alignment:
Q  6 agaagcaaaggccttcgtggagacattctagagcaaagaaagaaagaaatggttgaaggcggtggatgagaaaatgcattcattagataacaaccaaaca 105  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||     
T  5071984 agaaccaaaggccttcatggagacattctagagcaaagaaagaaagaaatggttgaaggcggtggatgagaaaatgcatttattggataacaaccaaacg 5071885  T
Q  106 tagaagcttgtgggactacttaagaatcatatggttctagaaatttaagaaacaaggctcaaatcaagactccaacaaagggttgtactcaggttgaggg 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071884 tagaagcttgtgggactacttaagaatcagatggttctagaaatttaataaacaaggctcaaatcaagactccaacaaagggttgtactcaggttgaggg 5071785  T
Q  206 aattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatccgagttggaacaaatgg 305  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071784 aattaattataatgagattttcacacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatccgagttggaacaaatgg 5071685  T
Q  306 acgtgaagatcatgttcttacatggaaagctttaagaaagactcatggtgcaaccagagggtgaagacaagtctaagatgtgtcttttgaagaaatattt 405  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071684 acgtgaagatcatgttcttacatggaaagctttaagagagactcatggtgcaaccagagggtgaagacaagtctaagatgtgtcttttgaagaaatattt 5071585  T
Q  406 gtattggttgaaacaaatcccaagaaaatgacgttgtcagttagataagtttctttcgatgactggttttgtaagagatgagtacgataattgtgtc 502  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5071584 gtattggttgaaacaaagcccaagaaaatgacgttgtcagtttgataagtttctttcgatgactggttttgtgagagatgagtacgataattgtgtc 5071488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 21986080 - 21985948
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||    
T  21986080 aagggtttcactcaagtggaggggatcgactacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaat 21985981  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
      ||||  ||||||||||||||||| |||||||    
T  21985980 tcaatcttgagttggaacaaatggatgtgaaga 21985948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 24264247 - 24264498
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||||||||||||||||||||||||||| || ||||||||||     
T  24264247 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatca 24264346  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  24264347 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 24264446  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  24264447 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 24264498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 330
Target Start/End: Original strand, 9188071 - 9188219
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| || ||||| || ||||||||||||||||||||||||||||| || |||||||||| ||    
T  9188071 aagggtttcactcaagtggaggggatcgactacaatgagatcttttcactggtagtgaaacattgttccataaggatacttatggctattgtgaatcaat 9188170  T
Q  283 ataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatgg 330  Q
      ||||  ||||||||||||||||| ||||||| |   |||||||||||    
T  9188171 tcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatgg 9188219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 24272859 - 24272962
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-----cgagttggaacaaatggacgtg 310  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||  ||||     |||||||||||||||||| |||    
T  24272859 aatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgatcgagttggaacaaatggatgtg 24272958  T
Q  311 aaga 314  Q
    ||||    
T  24272959 aaga 24272962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 422
Target Start/End: Complemental strand, 16882090 - 16881839
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||||||||||||||||||||||||||| || || |||||||     
T  16882090 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatagtgaatca 16881991  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  16881990 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 16881891  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  16881890 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 16881839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 417
Target Start/End: Complemental strand, 12405133 - 12404887
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  ||||||||||||||||||||||||||| |||| || ||||||||||     
T  12405133 caaagggtttcactcaagtggaggggatagactacaacgagatcttttcaccggtggtgaaacattgttccataaggatagttatggctattgtgaatca 12405034  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  12405033 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttatggag 12404934  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaa 417  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||||    
T  12404933 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaa 12404887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 18410818 - 18410685
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| || ||||  |||||||||||||||||||||||||||||||| || || ||||||| ||    
T  18410818 aagggtttcactcaagtggaggggatcgactacaatgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatcgtgaatcaat 18410719  T
Q  283 ataatc-cgagttggaacaaatggacgtgaagat 315  Q
      ||||  ||||||||||||||||| ||||||||    
T  18410718 tcaatcttgagttggaacaaatggatgtgaagat 18410685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 422
Target Start/End: Complemental strand, 21641800 - 21641602
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    ||||||||||||||||||||||||||||||||  | || ||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  21641800 gtggtgaaacattgttccataaggatacttatgactatcgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 21641701  T
Q  333 agctttaagaaagact---catggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | |   ||||| |||||| || |||      || |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  21641700 accttgaagagacaatctacatggagcaaccggaaggttttgtggaggacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 21641602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 3322010 - 3321917
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  3322010 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 3321917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 7073010 - 7073103
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  7073010 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 7073103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 18410620 - 18410569
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  18410620 gacaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaagcaaa 18410569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 25403616 - 25403707
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgatt 272  Q
    |||||| || ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||    
T  25403616 caaaggattttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgatt 25403707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 25408373 - 25408464
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgatt 272  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || |||   ||||| ||||||||||| |||||| ||||||| ||||||    
T  25408373 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcatcggtggtaaaacattgttctataagggtacttatggcgatt 25408464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 422
Target Start/End: Complemental strand, 39484918 - 39484669
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||    
T  39484918 aagggtttcactcaagtggaggggatcgactacaatgagatattctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaat 39484819  T
Q  283 ataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaaga 372  Q
      ||||  ||||| ||||||||||| ||||||| |   ||||||||||| || ||| |||| | | |   ||||| |||||| || |||      || ||    
T  39484818 tcaatcttgagttagaacaaatggatgtgaagaccgctttcttacatggtaaccttgaagagacaatctacatggagcaaccggaaggttttgtagagga 39484719  T
Q  373 caagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  39484718 caagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 39484669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 477
Target Start/End: Original strand, 39486137 - 39486441
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||    
T  39486137 aagggtttcactcaagtggaggggatcgactacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaat 39486236  T
Q  283 ataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaaga 372  Q
      ||||  ||||||||| ||||||| ||||||| |   ||||||||||   | ||| |||| | | |   ||||| | ||||||| |||      || ||    
T  39486237 tcaatcttgagttggaagaaatggatgtgaagaccgctttcttacatgttgaccttgaagagacaatctacatggagtaaccagaaggttttgtggagga 39486336  T
Q  373 caagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaatcccaagaaaatgacgttgtcagttagataagtttctttcgatgactggt 472  Q
    |||||||||||| ||||||||||||| || ||||||| ||||||| |||| ||| ||| |||||  | ||| ||| ||| | ||||||| || |||||||    
T  39486337 caagtctaagatatgtcttttgaagatatctttgtatgggttgaagcaaagccctagacaatgatatcgtcggtttgatgaatttcttttgaagactggt 39486436  T
Q  473 tttgt 477  Q
    |||||    
T  39486437 tttgt 39486441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 19346388 - 19346307
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaaga 314  Q
    |||||||| ||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| |||||||    
T  19346388 gtggtgaagcattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaaga 19346307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 20051983 - 20051890
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||||||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  20051983 caaagggttttactcaggtggaagggattgattataatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 20051890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 31058068 - 31057987
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaaga 314  Q
    ||||||||||||||||||||||||||||||||  | |||||||||| ||  ||||   |||||||||||||||| |||||||    
T  31058068 gtggtgaaacattgttccataaggatacttatgaccattgtgaatcaattcaatcttaagttggaacaaatggatgtgaaga 31057987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 17935043 - 17935136
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || ||||| || ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  17935043 caaagggttttactcaggtggaagggattgactacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 17935136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 39685208 - 39685340
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    ||||||| ||||||||| || || |||||||| ||||| || || ||||  || || ||||||||||| |||||| ||||||| |||||||| ||    |    
T  39685208 aagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaacatgt 39685307  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
    ||||||  ||||| ||||||||||| |||||||    
T  39685308 ataatcttgagttagaacaaatggatgtgaaga 39685340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 2739166 - 2739257
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||| ||||||||| || || |||||||| ||||| || || ||||   |||| ||||||||||| |||||| ||||||| ||||||||    
T  2739166 aagggttttactcaggtggaagggattgattacaatgaaatcttttcaccgctggtaaaacattgttctataagggtacttatggcgattgt 2739257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 19346241 - 19346190
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| ||||||||||||| |||| ||||||| ||||||| ||||    
T  19346241 gacaagtctaaggtgtgtcttttgaaaaaatctttgtatgggttgaagcaaa 19346190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 31134544 - 31134595
Alignment:
Q  217 atgagattttctcacttgtggtgaaacattgttccataaggatacttatagc 268  Q
    ||||||| || |||| ||||||||| ||||||||||||||| ||||||||||    
T  31134544 atgagatcttttcacatgtggtgaagcattgttccataaggttacttatagc 31134595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 31134708 - 31134759
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||| ||||||||||||||||||||||  ||||||  |||||||||||    
T  31134708 gacaagtccaagatgtgtcttttgaagaaattgttgtatgtgttgaaacaaa 31134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 22714456 - 22714363
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || |  |||||||| ||||| || || ||||  || || ||||||||||| |||||| ||||||| ||||||||    
T  22714456 caaagggttttactcaggtggaagtgattgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgt 22714363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 31057921 - 31057857
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaatcccaagaaaatg 435  Q
    |||||||||||| | |||||||||||||||| |||||||  |||||| |||| ||| || |||||    
T  31057921 gacaagtctaaggtatgtcttttgaagaaatctttgtatgagttgaagcaaaaccctaggaaatg 31057857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 234 - 422
Target Start/End: Original strand, 362 - 560
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    |||||||||||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  362 gtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 461  T
Q  333 agctttaagaaagact---catggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | |   ||||| |||||| || |||      ||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  462 accttgaagagacaatctacatggagcaacctgaaggttttgtggaagacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 24558510 - 24558634
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| ||||| || |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||    
T  24558510 aagggtttcactcaagtggaggggattgactacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaat 24558609  T
Q  283 ataatc-cgagttggaacaaatgga 306  Q
      ||||  |||||||||||||||||    
T  24558610 tcaatcttgagttggaacaaatgga 24558634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 24599542 - 24599666
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| ||||| || |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||    
T  24599542 aagggtttcactcaagtggaggggattgactacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaat 24599641  T
Q  283 ataatc-cgagttggaacaaatgga 306  Q
      ||||  |||||||||||||||||    
T  24599642 tcaatcttgagttggaacaaatgga 24599666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 422
Target Start/End: Complemental strand, 33770149 - 33769951
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    |||||||| ||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  33770149 gtggtgaagcattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 33770050  T
Q  333 agctttaagaaagact---catggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | |   ||||| |||||| || |||      || |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  33770049 accttgaagagacaatctacatggagcaaccggaaggttttgtggaggacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 33769951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 28805646 - 28805778
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||||||||||||||||||||||||||| || ||||||||||     
T  28805646 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatca 28805745  T
Q  281 atataatc-cgagttggaacaaatggacgtgaa 312  Q
    ||  ||||  ||||||||||||||||| |||||    
T  28805746 attcaatcttgagttggaacaaatggatgtgaa 28805778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 27446986 - 27446852
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  27446986 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatca 27446887  T
Q  281 atataatc-cgagttggaacaaatggacgtgaaga 314  Q
    ||  ||||  ||||||||||||||||| |||||||    
T  27446886 attcaatcttgagttggaacaaatggatgtgaaga 27446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 37559517 - 37559768
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || |||||||||      
T  37559517 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatta 37559616  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| ||||||||| |||      ||     
T  37559617 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccagaaggttttgtggag 37559716  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    ||||||||||||  ||||||||||||||||| ||||||| ||||||| ||||    
T  37559717 gacaagtctaaggcgtgtcttttgaagaaatctttgtatgggttgaagcaaa 37559768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 28834169 - 28834124
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatc 279  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  28834169 gtggtgaaacattgttccataaggatacttatggctattgtgaatc 28834124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 422
Target Start/End: Original strand, 31399969 - 31400167
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    |||||||| ||||||||||||||||||||||| || || ||||||| ||   |||  ||||||||||||||||| ||||||| |   |||||||||||      
T  31399969 gtggtgaagcattgttccataaggatacttatggctatagtgaatcaattcgatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 31400068  T
Q  333 agctttaagaaagactc---atggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | ||   |||| |||||| || |||      || |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  31400069 accttgaagagacaatctacatggagcaaccggaaggttttgtggaggacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 31400167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 43594284 - 43594150
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| |||||||||||||||||| ||||  | ||||||||||     
T  43594284 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatatttatgactattgtgaatca 43594185  T
Q  281 atataatc-cgagttggaacaaatggacgtgaaga 314  Q
    ||  ||||  ||||||||||||||||| |||||||    
T  43594184 attcaatcttgagttggaacaaatggatgtgaaga 43594150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 43627078 - 43626944
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| |||||||||||||||||| ||||  | ||||||||||     
T  43627078 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatatttatgactattgtgaatca 43626979  T
Q  281 atataatc-cgagttggaacaaatggacgtgaaga 314  Q
    ||  ||||  ||||||||||||||||| |||||||    
T  43626978 attcaatcttgagttggaacaaatggatgtgaaga 43626944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 27446786 - 27446735
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||| ||||||| ||||||| ||||||| ||||    
T  27446786 gacaagtctaaggtgtgtcttttaaagaaatctttgtatgggttgaagcaaa 27446735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 28805846 - 28805897
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||||| ||||    
T  28805846 gacaagtctaaggtgcgtcttttgaagaaatctttgtatgggttgaagcaaa 28805897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 43594084 - 43594033
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||| ||||||| ||||||| ||||||| ||||    
T  43594084 gacaagtctaaggtgtgtcttttaaagaaatctttgtatgggttgaagcaaa 43594033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 43626878 - 43626827
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||| ||||||| ||||||| ||||||| ||||    
T  43626878 gacaagtctaaggtgtgtcttttaaagaaatctttgtatgggttgaagcaaa 43626827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 25450716 - 25450809
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| |||| |||| || || |||||||| || || || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  25450716 caaagggttttacttaggtggaagggattgattacaacgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 25450809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 30102761 - 30102725
Alignment:
Q  387 gtcttttgaagaaatatttgtattggttgaaacaaat 423  Q
    |||||||||||||||||||||||  ||||||||||||    
T  30102761 gtcttttgaagaaatatttgtatgagttgaaacaaat 30102725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 3791059 - 3791191
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||    
T  3791059 aagggtttcactcaagtggaggggatcgagtacaatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaat 3791158  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
      ||||  ||||||||||||||||| |||||||    
T  3791159 tcaatcttgagttggaacaaatggatgtgaaga 3791191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 330
Target Start/End: Original strand, 16626918 - 16627066
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| |||||||   ||||||||||||||||||||||||||||||| || |||||||||| ||    
T  16626918 aagggtttcactcaagtggaggggatggactacaatgagatcttctcaccgatggtgaaacattgttccataaggatacttatggctattgtgaatcaat 16627017  T
Q  283 ataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatgg 330  Q
      ||||  ||||||||||||||||| ||||||| | | |||||||||||    
T  16627018 tcaatcttgagttggaacaaatggatgtgaagaccgttttcttacatgg 16627066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 422
Target Start/End: Complemental strand, 18857739 - 18857488
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||||||||||||||||||||||||||| || ||||||||||     
T  18857739 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatca 18857640  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  18857639 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 18857540  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  18857539 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 18857488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 5145069 - 5144937
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| ||||| || |||||||| |||||||  |||||||||||||||||||||| ||||||||| |  |||||||||| ||    
T  5145069 aagggtttcactcaagtggaggggattgactacaatgagatcttctcaccggtggtgaaacattgttccataacgatacttatggttattgtgaatcaat 5144970  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
      ||||  ||||| ||||||||||| |||||||    
T  5144969 tcaatcttgagtttgaacaaatggatgtgaaga 5144937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 9227325 - 9227475
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  9227325 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccagtggtgaagcattgttccataaggatacttatggctattgtgaatca 9227424  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatgg 330  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||    
T  9227425 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatgg 9227475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 15315276 - 15315369
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| |||||||||||| || ||||| || ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  15315276 caaagggttttactcaggttgaagggattgactacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 15315369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 16627116 - 16627174
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaatcccaag 429  Q
    |||||||||||| | |||||||||||||||| ||||||| ||||||| |||| ||||||    
T  16627116 gacaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaagcaaagcccaag 16627174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 4568302 - 4568395
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||| | ||||||||||| |||||| ||||||| ||||||||    
T  4568302 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtgataaaacattgttctataagggtacttatggcgattgt 4568395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 5144875 - 5144818
Alignment:
Q  369 aagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaatccc 426  Q
    |||||||||||||| | |||||||| ||||||| ||||||| ||||||| ||||||||    
T  5144875 aagacaagtctaaggtatgtcttttaaagaaatctttgtatgggttgaagcaaatccc 5144818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 3791257 - 3791303
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaa 417  Q
    |||||||||||| | |||||||||||||||| ||||||| |||||||    
T  3791257 gacaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaa 3791303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 16637120 - 16637213
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| |||||| || || || |||||||| ||||| || || |||   ||||| ||||||||||| |||||| ||||||| ||||||||    
T  16637120 caaagggttttactcatgtggaagggattgattacaatgaaatcttttcagcggtggtaaaacattgttcaataagggtacttatggcgattgt 16637213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 26401309 - 26401408
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaaga 314  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| |||||||    
T  26401309 aatgagatattctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaaga 26401408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 10687188 - 10687439
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  10687188 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatca 10687287  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  10687288 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 10687387  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  10687388 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 10687439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 422
Target Start/End: Complemental strand, 35742552 - 35742301
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  35742552 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatca 35742453  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  35742452 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 35742353  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  35742352 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 35742301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 422
Target Start/End: Original strand, 18868647 - 18868845
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    |||||||||||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  18868647 gtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 18868746  T
Q  333 agctttaagaaagactc---atggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | ||   |||| |||||| || |||      || |||||||| ||| |||||||||||||||||| ||||||| ||||||| ||||    
T  18868747 accttgaagagacaatctacatggagcaaccggaaggttctgtggaggacaagtccaaggtgtgtcttttgaagaaatctttgtataggttgaagcaaa 18868845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 26298543 - 26298411
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| || ||||  |||||||||||||||||||||||||||||||| || || ||||||| ||    
T  26298543 aagggtttcactcaagtggaggggatcgactacaatgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatcgtgaatcaat 26298444  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
      ||||  ||||||||||||||||| |||||||    
T  26298443 tcaatcttgagttggaacaaatggatgtgaaga 26298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 26311800 - 26311668
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||||| || ||||| || || || |||||||| || ||||  |||||||||||||||||||||||||||||||| || || ||||||| ||    
T  26311800 aagggtttcactcaagtggaggggatcgactacaatgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatcgtgaatcaat 26311701  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
      ||||  ||||||||||||||||| |||||||    
T  26311700 tcaatcttgagttggaacaaatggatgtgaaga 26311668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 422
Target Start/End: Original strand, 33035910 - 33036108
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    |||||||||||||||||||||||||||||||| || || ||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  33035910 gtggtgaaacattgttccataaggatacttatggctatcgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 33036009  T
Q  333 agctttaagaaagactc---atggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | ||   |||| |||||| || |||      || |||||||| ||| |||||||||||||||||| ||||||| ||||||| ||||    
T  33036010 accttgaagagacaatctacatggagcaaccggaaggttttgtggaggacaagtccaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 33036108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 4814448 - 4814355
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  4814448 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 4814355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 28893723 - 28893816
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  28893723 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 28893816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 28330856 - 28330988
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    ||||||| ||||||||| || || |||||||| ||||| || || ||||  || || ||||||||||| |||||| ||||||| |||||||| ||    |    
T  28330856 aagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgttaacatgt 28330955  T
Q  283 ataatc-cgagttggaacaaatggacgtgaaga 314  Q
    ||||||  ||||| ||||||||||| |||||||    
T  28330956 ataatcttgagttagaacaaatggatgtgaaga 28330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 26298345 - 26298294
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  26298345 gacaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaagcaaa 26298294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 26311602 - 26311551
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  26311602 gacaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaagcaaa 26311551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 16754482 - 16754389
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||| | ||||||||| || || |||||||| ||||| || || ||||  || || ||||||||||| |||||| ||||||| ||||||||    
T  16754482 caaagggctttactcaggtggaagggattgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgt 16754389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 21040389 - 21040482
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||| | || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| | ||||||    
T  21040389 caaagggttttactcagttggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggagattgt 21040482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 422
Target Start/End: Complemental strand, 8514257 - 8514006
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||||||||||||||||||||||||||| || || |||||||     
T  8514257 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatagtgaatca 8514158  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| ||||||||| |||      ||     
T  8514157 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccagaaggttttgtagag 8514058  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  8514057 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 8514006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 22171232 - 22171483
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || |||||||| ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  22171232 caaagggtttcactcaagtggaggggatcgactacaacgagattttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatca 22171331  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  22171332 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 22171431  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  22171432 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 22171483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 422
Target Start/End: Complemental strand, 32477503 - 32477252
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||||||||||||||||||||||||||| || || |||||||     
T  32477503 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatagtgaatca 32477404  T
Q  281 atataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| ||||||||| |||      ||     
T  32477403 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccagaaggttttgtagag 32477304  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  32477303 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 32477252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 422
Target Start/End: Complemental strand, 1307999 - 1307783
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaaga 314  Q
    |||||||| || ||||  |||||||||||||||||||||||||||||||| || || ||||||| ||  ||||  ||||||||||||||||| |||||||    
T  1307999 aatgagatcttttcaccggtggtgaaacattgttccataaggatacttatggctatcgtgaatcaattcaatcttgagttggaacaaatggatgtgaaga 1307900  T
Q  315 tcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatattt 405  Q
     |   |||||||||||  | ||| |||| | | |   ||||| ||||||||| |||      || |||||||||||| | |||||||||||||||| |||    
T  1307899 ccgctttcttacatggtgaccttcaagagacaatctacatggagcaaccagaaggttttgtggaggacaagtctaaggtatgtcttttgaagaaatcttt 1307800  T
Q  406 gtattggttgaaacaaa 422  Q
    |||| ||||||| ||||    
T  1307799 gtatgggttgaagcaaa 1307783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 3326485 - 3326600
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatcc-gagttggaacaaatggacgtgaaga 314  Q
    |||||||| |||| ||  |||||||||||||||||||||||||||| ||| || |||||||||| ||  ||||  ||||||||||||||||| |||||||    
T  3326485 aatgagatcttcttaccggtggtgaaacattgttccataaggatacatatcgctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaaga 3326584  T
Q  315 tcatgttcttacatgg 330  Q
     |   |||||||||||    
T  3326585 ccgctttcttacatgg 3326600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 422
Target Start/End: Complemental strand, 16257179 - 16256981
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    ||||||||||||||| ||||||||||||||||  | |||||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  16257179 gtggtgaaacattgtaccataaggatacttatgactattgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtg 16257080  T
Q  333 agctttaagaaagact---catggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | |   ||||| ||||||||| |||      || |||||||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  16257079 accttgaagagacaatctacatggagcaaccagaaggttttgtggaggacaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaagcaaa 16256981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 54191467 - 54191560
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||||||||||||||| |||||| ||||||| ||||||||    
T  54191467 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtgaaacattgttctataagggtacttatggcgattgt 54191560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 2675144 - 2675395
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || || |||||||     
T  2675144 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctatagtgaatca 2675243  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagactc---atggtgcaaccagagggt------gaa 370  Q
    ||   |||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | ||   |||| |||||| || |||      ||     
T  2675244 attcgatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 2675343  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  2675344 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 2675395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 10096028 - 10095935
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  10096028 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 10095935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 10202914 - 10202821
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  10202914 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 10202821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 10899968 - 10900061
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  10899968 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 10900061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 16460423 - 16460516
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || |  |||||||| ||||| || || ||||  || || ||||||||||| |||||| ||||||| ||||||||    
T  16460423 caaagggttttactcaggtggaagtgattgattacaatgaaatcttttcaccggtagtaaaacattgttctataagggtacttatggcgattgt 16460516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 10609995 - 10609911
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttat 265  Q
    |||||| || ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| |||||||    
T  10609995 caaaggattttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttat 10609911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 47701996 - 47702093
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaa 312  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| |||||    
T  47701996 aatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaa 47702093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 13599995 - 13599896
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaaga 314  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| |||||||    
T  13599995 aatgagatcttctcaccagtggtgaaacattattccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaaga 13599896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 422
Target Start/End: Complemental strand, 41395361 - 41395163
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaagatcatgttcttacatggaa 332  Q
    |||||||| ||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||      
T  41395361 gtggtgaagcattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtc 41395262  T
Q  333 agctttaagaaagact---catggtgcaaccagagggt------gaagacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    | ||| |||| | | |   ||||| |||||| || |||      || |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  41395261 accttgaagagacaatctacatggagcaaccggaaggttttgtggaggacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaaccaaa 41395163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 2396477 - 2396384
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || ||| |||| ||||| || |||||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  2396477 caaagggttttactcaggtggaagggatttattacaatgaaatcttctcaccggtggtaaaacattgttctataagggtacttatggcgattgt 2396384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 9524687 - 9524780
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  9524687 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 9524780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 47101131 - 47101182
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  47101131 gacaagtctaaggtatgtcttttgaagaaatctttgtataggttgaagcaaa 47101182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 47702162 - 47702212
Alignment:
Q  372 acaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    ||||||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  47702162 acaagtctaaggtatgtcttttgaagaaatctttgtatgggttgaagcaaa 47702212  T

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Target: scaffold0078 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 306
Target Start/End: Complemental strand, 34200 - 34076
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgat 282  Q
    |||||||  ||| |||| ||||| || || ||||||||||| |||||||  |||||||||||||||||||||||||||||||| |  |||||||||| ||    
T  34200 aagggtttaacttaggtggaggggatcgagtataatgagatcttctcaccggtggtgaaacattgttccataaggatacttatggatattgtgaatcaat 34101  T
Q  283 ataatc-cgagttggaacaaatgga 306  Q
      ||||  |||||||||||||||||    
T  34100 tcaatcttgagttggaacaaatgga 34076  T

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Target: scaffold0078; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 34002 - 33951
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||| ||||||| ||||||| ||||||| ||||    
T  34002 gacaagtctaaggtgtgtcttttaaagaaatctttgtatgggttgaagcaaa 33951  T

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Target: scaffold0006 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 7792 - 7693
Alignment:
Q  216 aatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatc-cgagttggaacaaatggacgtgaaga 314  Q
    |||||||| |||||||  ||||||||||||| |||||||||||||||||| || |||||||||| ||  ||||  ||||||||||||||||| |||||||    
T  7792 aatgagatcttctcaccagtggtgaaacattattccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacaaatggatgtgaaga 7693  T

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Target: scaffold0197 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 17233 - 17484
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  17233 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatca 17332  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  17333 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 17432  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  17433 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 17484  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 422
Target Start/End: Original strand, 14740496 - 14740747
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatcg 280  Q
    |||||||||  ||||| || ||||| || || || || ||||| || ||||  |||||||| ||||||||||||||||||||||| || ||||||||||     
T  14740496 caaagggtttcactcaagtggaggggatcgactacaacgagatcttttcaccggtggtgaagcattgttccataaggatacttatggctattgtgaatca 14740595  T
Q  281 atataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatggaaagctttaagaaagact---catggtgcaaccagagggt------gaa 370  Q
    ||  ||||  ||||||||||||||||| ||||||| |   |||||||||||  | ||| |||| | | |   ||||| |||||| || |||      ||     
T  14740596 attcaatcttgagttggaacaaatggatgtgaagaccgctttcttacatggtgaccttgaagagacaatctacatggagcaaccggaaggttttgtggag 14740695  T
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaa 422  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||| ||||    
T  14740696 gacaagtctaaggtgtgtcttttgaagaaatctttgtatgggttgaagcaaa 14740747  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 279
Target Start/End: Original strand, 24434240 - 24434336
Alignment:
Q  183 aagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgtgaatc 279  Q
    |||||||  ||||| || ||||| ||| | || |||||||| |||||||  |||||||||||||||||||||||||||||||| |  ||||||||||    
T  24434240 aagggtttcactcaagtggaggggatttactacaatgagatattctcaccggtggtgaaacattgttccataaggatacttatggttattgtgaatc 24434336  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 13881698 - 13881791
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  13881698 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 13881791  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 17692074 - 17691981
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  17692074 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 17691981  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 33334053 - 33334150
Alignment:
Q  234 gtggtgaaacattgttccataaggatacttatagcgattgtgaatcgatataatcc-gagttggaacaaatggacgtgaagatcatgttcttacatgg 330  Q
    |||||||| ||||||||||||||||||||||| || |||||||||| ||  ||||  ||||||||||| ||||| ||||||| |   |||||||||||    
T  33334053 gtggtgaagcattgttccataaggatacttatggctattgtgaatcaattcaatcttgagttggaacagatggatgtgaagaccgctttcttacatgg 33334150  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 35203285 - 35203192
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| ||||||||| || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  35203285 caaagggttttactcaggtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 35203192  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 477
Target Start/End: Original strand, 33334200 - 33334306
Alignment:
Q  371 gacaagtctaagatgtgtcttttgaagaaatatttgtattggttgaaacaaatcccaagaaaatgacgttgtcagttagataagtttctttcgatgactg 470  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||| |||| ||| ||  ||||   | ||||||| ||| ||||||||| || ||| |    
T  33334200 gacaagtctaaggtgtgtcttttgaagaaatctttgtacgggttgaagcaaagccctaggcaatggtatcgtcagtttgatgagtttcttttgaagaccg 33334299  T
Q  471 gttttgt 477  Q
    |||||||    
T  33334300 gttttgt 33334306  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 25944628 - 25944721
Alignment:
Q  181 caaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    ||||||||| |||||| || || || |||||||| ||||| || || ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  25944628 caaagggttttactcaagtggaagggattgattacaatgaaatcttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 25944721  T

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Target: scaffold0209 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 364 - 272
Alignment:
Q  182 aaagggttgtactcaggttgagggaattgattataatgagattttctcacttgtggtgaaacattgttccataaggatacttatagcgattgt 274  Q
    |||||||| ||||||||| || || |||||||| ||||| ||||| ||||  ||||| ||||||||||| |||||| ||||||| ||||||||    
T  364 aaagggttttactcaggtggaagggattgattacaatgaaattttttcaccggtggtaaaacattgttctataagggtacttatggcgattgt 272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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