View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_high_9 (Length: 474)

Name: NF12679_high_9
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_high_9
NF12679_high_9
[»] chr8 (9 HSPs)
chr8 (55-464)||(1962277-1962681)
chr8 (74-464)||(2015748-2016143)
chr8 (220-462)||(2019133-2019375)
chr8 (243-464)||(2008734-2008955)
chr8 (242-464)||(2005354-2005576)
chr8 (243-463)||(1968060-1968280)
chr8 (224-367)||(2013378-2013522)
chr8 (248-433)||(2012380-2012565)
chr8 (245-324)||(1964500-1964581)
[»] chr1 (1 HSPs)
chr1 (242-463)||(5901638-5901859)
[»] chr3 (1 HSPs)
chr3 (243-438)||(18189425-18189620)
[»] chr7 (2 HSPs)
chr7 (344-388)||(16565749-16565793)
chr7 (344-388)||(16599869-16599913)


Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 55 - 464
Target Start/End: Original strand, 1962277 - 1962681
Alignment:
Q  55 agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962277 agatacacttggtgcctgttttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaa 1962376  T
Q  155 catgtataggtagttgagttgagttctgtttttggttttcctttcacaagcatnnnnnnntattaacttataagctgtaaactaagaacaaattttcatg 254  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  1962377 catgtataggtagttgagtt-----ctgtttttggttttcctttcacaagcataaaaaaatattaacttataagctgtaaactaagaacaaattttcatg 1962471  T
Q  255 gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962472 gagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatact 1962571  T
Q  355 ttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttcc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1962572 ttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttcc 1962671  T
Q  455 accagtgaac 464  Q
    ||||||||||    
T  1962672 accagtgaac 1962681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 74 - 464
Target Start/End: Complemental strand, 2016143 - 2015748
Alignment:
Q  74 tttgttcttcccaacatgtgtggctcttattcattcgttttgaaacttctcaaacatatacataatgttgattttgcagaacatgtataggtagttgagt 173  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||  |||||||||| |||||| |||||| |||||    
T  2016143 tttgttcttcccatcatgtgtggctcttattcat-cgttttgaaacttgtcaaacacatacataatgtcaattttgcagagcatgtagaggtaggtgagt 2016045  T
Q  174 tgagttctgtttttggttttcctttcacaagcatnnnnnnntattaac-----------ttataagctgtaaactaagaacaaattttcatggagaaaac 262  Q
    |     ||||||||||||||||||||||||||||        |  ||            |||||||| |||||||||||||||||||| |||||||||||    
T  2016044 t-----ctgtttttggttttcctttcacaagcataaaaaaaaaaaaaaaaaaaaaaaagttataagcggtaaactaagaacaaatttttatggagaaaac 2015950  T
Q  263 agttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcatccatactttcatgtc 362  Q
    | ||||||||||||||||||| ||||||||||||||||| ||  || | |||||||||||||||||   ||||||||||||||||||| |||||||||||    
T  2015949 aattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatccaaactttcatgtc 2015850  T
Q  363 acatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctgtacttttcttccaccagtga 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2015849 acatgcttcattccctcacttggttctctcccaactgattcaaaaacaatccttcaaactcttccatcaaacatcagctgtacttttcttccaccagtga 2015750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 220 - 462
Target Start/End: Complemental strand, 2019375 - 2019133
Alignment:
Q  220 acttataagctgtaaactaagaacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttca 319  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  2019375 acttataagctgtaaactaataactaattttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttca 2019276  T
Q  320 attctccaaactacttgttcagcttcatccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaa 419  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||||| ||||||||||| ||  || ||    
T  2019275 attctccaagctacttgttcagcttcatccatactttcatgtcacatgtttcattccctcaattgagtctctcccaaccgattcaaaaaccatcattcaa 2019176  T
Q  420 actcttccatcaaacatcagctgtacttttcttccaccagtga 462  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  2019175 actcttccatcaaacatcaactgtacttttcttccatcagtga 2019133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 243 - 464
Target Start/End: Complemental strand, 2008955 - 2008734
Alignment:
Q  243 caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc 342  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  |||| |||||||||||||||||   |||||||||||    
T  2008955 caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcagc 2008856  T
Q  343 ttcatccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctg 442  Q
    |||||||| |||||||||||||||| ||||||||| | ||||| |||| | ||| ||   ||||| | || ||| ||||||||||||||||||||| |      
T  2008855 ttcatccaaactttcatgtcacatgtttcattcccacgcttggatctccctcaaatgccacaaaatctatccttcaaactcttccatcaaacatcaacca 2008756  T
Q  443 tacttttcttccaccagtgaac 464  Q
     |||||||||||||| ||||||    
T  2008755 cacttttcttccacctgtgaac 2008734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 242 - 464
Target Start/End: Complemental strand, 2005576 - 2005354
Alignment:
Q  242 acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag 341  Q
    |||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||  || | |||||||||||||||||   |||||||||     
T  2005576 acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa 2005477  T
Q  342 cttcatccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagct 441  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||| | |||||    ||||| | || ||| ||||||||||||||||||||| |     
T  2005476 cttcatccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaaaatctatccttcaaactcttccatcaaacatcaacc 2005377  T
Q  442 gtacttttcttccaccagtgaac 464  Q
     ||||||||||||||| ||||||    
T  2005376 atacttttcttccacctgtgaac 2005354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 243 - 463
Target Start/End: Original strand, 1968060 - 1968280
Alignment:
Q  243 caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc 342  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||  |||| |||||||||||||||||   ||||||||| |    
T  1968060 caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaagagacttgttcaac 1968159  T
Q  343 ttcatccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagctg 442  Q
    |||||||| |||||||||||||||| ||||||||| ||||||| |||| | ||| ||   ||||| | || ||| ||||||||||||||||||||| |      
T  1968160 ttcatccagactttcatgtcacatgtttcattcccacacttggatctccctcaaatgccacaaaatctatccttcaaactcttccatcaaacatcaacca 1968259  T
Q  443 tacttttcttccaccagtgaa 463  Q
     |||||||||||||| |||||    
T  1968260 cacttttcttccacctgtgaa 1968280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 224 - 367
Target Start/End: Complemental strand, 2013522 - 2013378
Alignment:
Q  224 ataagctgtaaactaag-aacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaatt 322  Q
    ||||||||||||||||  ||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  2013522 ataagctgtaaactaaacaacaaatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaatt 2013423  T
Q  323 ctccaaactacttgttcagcttcatccatactttcatgtcacatg 367  Q
     || || ||||||||||||||||||||||||||||||||||||||    
T  2013422 ttcgaagctacttgttcagcttcatccatactttcatgtcacatg 2013378  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 248 - 433
Target Start/End: Complemental strand, 2012565 - 2012380
Alignment:
Q  248 tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat 347  Q
    ||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||| ||||| ||  ||||| | |||||||||    
T  2012565 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcat 2012466  T
Q  348 ccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaa 433  Q
    ||  || |||||||||||||  |||||||| |||||||||||| ||||| |   ||| |||| || ||| |||| |||||||||||    
T  2012465 ccggacattcatgtcacatgtatcattcccacacttggttctcccccaagttcctcagaaaccatccttcaaacccttccatcaaa 2012380  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 1964500 - 1964581
Alignment:
Q  245 aattttcatggagaaaacagttcatattgcagttgttcctggtgttgg--atatagccacttattcccaattcttcaattct 324  Q
    ||||| ||||||||||||  |||| |||||||||||||| ||||||||  ||||| ||| ||| || | |||||||||||||    
T  1964500 aatttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct 1964581  T

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Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 463
Target Start/End: Original strand, 5901638 - 5901859
Alignment:
Q  242 acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag 341  Q
    |||||||||||||||||||||| |||| ||||| ||| |||| |||| | | |||||||| ||| || | |||||| |||||||||| ||||||||||||    
T  5901638 acaaattttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcag 5901737  T
Q  342 cttcatccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatcagct 441  Q
    || |||||| ||||||||||||| |||||||||||  ||||||| || | | ||| ||  |||||  || | ||| |||||||||||||||||||  |||    
T  5901738 ctccatccagactttcatgtcacttgcttcattcctacacttggatcaccctcaagtgcctcaaagtcattccttcaaactcttccatcaaacattggct 5901837  T
Q  442 gtacttttcttccaccagtgaa 463  Q
      |||||||||||||| |||||    
T  5901838 acacttttcttccacctgtgaa 5901859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 438
Target Start/End: Original strand, 18189425 - 18189620
Alignment:
Q  243 caaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagc 342  Q
    ||||||| |||||| |||||| |||| |||||||||||||| |||||||| ||| | |||||| |||| |||||||||||||| ||  ||||| | || |    
T  18189425 caaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatc 18189524  T
Q  343 ttcatccatactttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatacttgaaactcttccatcaaacatca 438  Q
    |||||||| || |||||| ||||||  |||||| | |||||||||||| ||||| |   ||| || | || ||| |||||||||||||||| ||||    
T  18189525 ttcatccagacattcatgccacatgtatcattcgcacacttggttctcccccaagttcctcagaacccatccttcaaactcttccatcaaatatca 18189620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 16565749 - 16565793
Alignment:
Q  344 tcatccatactttcatgtcacatgcttcattccctcacttggttc 388  Q
    ||||||| | ||||||||||| ||| |||||||||||||||||||    
T  16565749 tcatccaaattttcatgtcacttgcatcattccctcacttggttc 16565793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 16599913 - 16599869
Alignment:
Q  344 tcatccatactttcatgtcacatgcttcattccctcacttggttc 388  Q
    ||||||| | ||||||||||| ||| |||||||||||||||||||    
T  16599913 tcatccaaattttcatgtcacttgcatcattccctcacttggttc 16599869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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