View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_11 (Length: 429)
Name: NF12679_low_11
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 6169610 - 6170022
Alignment:
| Q |
1 |
ttaaaaaaccaacaatgcacttgtagagtggctttcaatgtcttaaaagtttaaattttatcttttcaatataaaacttggcttttaattcnnnnnnnnn |
100 |
Q |
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| T |
6169610 |
ttaaaaaaccaacaatgcacttgtagagtggctttcaatgtcttaaaagtttaaattttatcttttcaatataaaacttggcttttaattctttttttag |
6169709 |
T |
|
| Q |
101 |
nnnnngcgacgtgatataaggcaatgcagcaactgcattgtgcatgtatgctctcattcttcaccaagtataatttattcaccggagaattaaattcaaa |
200 |
Q |
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| T |
6169710 |
tttttgcgacgtgatataaggcaatgcagcaactgcattgtgcatgtatgctctcattcttcaccaagtataatttattcaccggagaattaaattcaaa |
6169809 |
T |
|
| Q |
201 |
ggtgaagaatattaaaacaataactgattctctcttaaataacatgaacatgtactgcaagattattaactccaagaagtgttttattgtctttcaaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6169810 |
ggtgaagaatattaaaacaataactgattctctcataaataacatgaacatgtactgcaagattattaactccaagaagtgttttattgtctttcaaatt |
6169909 |
T |
|
| Q |
301 |
taactacaaacatgacatgttattgtcaatgatctaaacatggatactcatgtttctctgcctaccatttgcaattacattctccaaaatcaaagggaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6169910 |
taactacaaacatgacatgttattgtcaatgatctaaacatggatactcatgtttctctgcctaccatttgcaattacattctccaaaatcaaagggaaa |
6170009 |
T |
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| Q |
401 |
gttatatatattt |
413 |
Q |
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| T |
6170010 |
gttatatatattt |
6170022 |
T |
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