View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_low_13 (Length: 350)

Name: NF12679_low_13
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_low_13
NF12679_low_13
[»] chr2 (1 HSPs)
chr2 (13-350)||(41358612-41358951)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 41358612 - 41358951
Alignment:
Q  13 gagagcaacaggctaatgatagaggatcatcgatacaccacatctttaaccaaaactttcgatattgagtatataaattacctctctatctaatatccga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  41358612 gagagcaacaggctaatgatagaggatcatcgatacaccacatctttaaccaaaaccttcgatattgagtatatagattacctctctatctaatatccga 41358711  T
Q  113 gttcattcataaatagtttcctaaagcttgtatatttcttatgaattaaatgtgagttccatgacttgagaaattttttgagttccgtatcaannnnnnn 212  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||           
T  41358712 gttcattcataaatagtttcctaaagcatgtatatttcttatgaattaaatgcgatttccatgacttgagaaattttttgagttccgtatcaa-tttttt 41358810  T
Q  213 nnnaaacaaatatatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaat 312  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358811 ttaaaacaaatatatatagagtagtataatccaacagagtacctataatatttgttaattttagttttactaacctgtgtgtctaaatcagatgaagaat 41358910  T
Q  313 ttgt---agaaggagaatcactgagcaaggtgttaaatgac 350  Q
    ||||   ||||| |||| |||| ||||||||||||||||||    
T  41358911 ttgtagaagaagaagaaccactaagcaaggtgttaaatgac 41358951  T

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