View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_low_14 (Length: 319)

Name: NF12679_low_14
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_low_14
NF12679_low_14
[»] chr7 (3 HSPs)
chr7 (22-305)||(5071239-5071523)
chr7 (182-227)||(16881670-16881715)
chr7 (182-228)||(24264621-24264667)
[»] chr4 (3 HSPs)
chr4 (182-276)||(3791382-3791477)
chr4 (182-227)||(9227631-9227676)
chr4 (182-227)||(18857319-18857364)
[»] chr8 (4 HSPs)
chr8 (182-263)||(26401612-26401694)
chr8 (182-253)||(35742132-35742204)
chr8 (182-227)||(10687563-10687608)
chr8 (182-227)||(18868969-18869014)
[»] chr3 (3 HSPs)
chr3 (182-243)||(3326772-3326833)
chr3 (182-227)||(8513837-8513882)
chr3 (182-227)||(32477083-32477128)
[»] chr5 (3 HSPs)
chr5 (182-228)||(31400290-31400336)
chr5 (182-228)||(33769782-33769828)
chr5 (182-227)||(28806021-28806066)
[»] chr2 (2 HSPs)
chr2 (182-228)||(19346021-19346067)
chr2 (182-227)||(39486510-39486555)
[»] scaffold0197 (1 HSPs)
scaffold0197 (182-227)||(17608-17653)
[»] chr6 (1 HSPs)
chr6 (182-227)||(14740870-14740915)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 5071239 - 5071523
Alignment:
Q  22 gctgccaacaacttaaaaaatacttgttttaagtcactttcacaataattatctacctcgatttcaaa--ggtgatgatgctcatttaaccatcaatcac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||    
T  5071239 gctgccaacaacttaaaaaatacttgttttaagtcactttcacaataattatctccctcgatttcaaatcggtgatgatgctcatttaaccatcaatcac 5071338  T
Q  120 cttattcttcttnnnnnnnnnccataaatcaccttgttactcctttctcattgagcttaccgatctcatccttgctagaacttgtcatcaagatatcacc 219  Q
    ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071339 cttattcttcttaaaaaaaa-ccataaatcaccttgttactcctttctcattgagcttaccgatctcatccttgctagaacttgtcatcaagatatcacc 5071437  T
Q  220 catatatagcaataggtagagaataatttctcatcactcttcaatacgtagacacaattatcgtactcatctctcacaaaaccagt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5071438 catatatagcaataggtagagaataatttctcatcactcttcaatacgtagacacaattatcgtactcatctctcacaaaaccagt 5071523  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 16881670 - 16881715
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||    
T  16881670 atctcatccttgctagaacttgccatcaagatatcatccacatata 16881715  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 24264667 - 24264621
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatag 228  Q
    ||||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  24264667 atctcatccttgctagagcttgccatcaagatatcatccacatatag 24264621  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 3791477 - 3791382
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaat-aatttctcatcactcttcaatacgtagacacaa 276  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  ||||||||||| | ||||||| | |||||||| | ||| ||||||    
T  3791477 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaacatgtacacacaa 3791382  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 9227676 - 9227631
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  9227676 atctcatccttgctagagcttgccatcaagatatcatccacatata 9227631  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 18857319 - 18857364
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  18857319 atctcatccttgctagagcttgccatcaagatatcatccacatata 18857364  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 26401694 - 26401612
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaat-aatttctcatcactcttcaa 263  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  ||||||||||| | ||||||| | ||||||||    
T  26401694 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaaggtagagaatgactttctcacccctcttcaa 26401612  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 35742132 - 35742204
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaataa-tttctcat 253  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  || |||||||||| ||||||||    
T  35742132 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaagatagagaataactttctcat 35742204  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 10687608 - 10687563
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  10687608 atctcatccttgctagagcttgccatcaagatatcatccacatata 10687563  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 18869014 - 18868969
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  18869014 atctcatccttgctagagcttgccatcaagatatcatccacatata 18868969  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 3326833 - 3326772
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatagcaataggtagagaat 243  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||| |  |||||||||||    
T  3326833 atctcatccttgctagagcttgccatcaagatatcatccacatatagaagaaggtagagaat 3326772  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 8513837 - 8513882
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  8513837 atctcatccttgctagagcttgccatcaagatatcatccacatata 8513882  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 32477083 - 32477128
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  32477083 atctcatccttgctagagcttgccatcaagatatcatccacatata 32477128  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 31400336 - 31400290
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatag 228  Q
    ||||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  31400336 atctcatccttgctagagcttgccatcaagatatcatccacatatag 31400290  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 33769782 - 33769828
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatag 228  Q
    ||||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  33769782 atctcatccttgctagagcttgccatcaagatatcatccacatatag 33769828  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 28806066 - 28806021
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  28806066 atctcatccttgctagagcttgccatcaagatatcatccacatata 28806021  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 19346021 - 19346067
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatatag 228  Q
    ||||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  19346021 atctcatccttgctagagcttgccatcaagatatcatccacatatag 19346067  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 39486555 - 39486510
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    |||||||||||||||||  ||||||||||||||||| ||| |||||    
T  39486555 atctcatccttgctagagtttgtcatcaagatatcatccacatata 39486510  T

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Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 17653 - 17608
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  17653 atctcatccttgctagagcttgccatcaagatatcatccacatata 17608  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 14740915 - 14740870
Alignment:
Q  182 atctcatccttgctagaacttgtcatcaagatatcacccatatata 227  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||    
T  14740915 atctcatccttgctagagcttgccatcaagatatcatccacatata 14740870  T

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