View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_low_16 (Length: 299)

Name: NF12679_low_16
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_low_16
NF12679_low_16
[»] chr6 (7 HSPs)
chr6 (5-299)||(31289781-31290053)
chr6 (53-269)||(27421059-27421275)
chr6 (39-221)||(26652118-26652300)
chr6 (39-221)||(26758086-26758268)
chr6 (96-246)||(26632715-26632865)
chr6 (96-246)||(26738691-26738841)
chr6 (157-217)||(31394770-31394831)
[»] scaffold0003 (1 HSPs)
scaffold0003 (53-269)||(66088-66304)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 31289781 - 31290053
Alignment:
Q  5 gcagagatacggctcacatcagtgccnnnnnnngaatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattcccta 104  Q
    ||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31289781 gcagagatatggctcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattcccta 31289880  T
Q  105 tggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgacct 204  Q
    |||||          ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289881 tggac----------gcgatc------------gatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgacct 31289958  T
Q  205 tcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggcaattgc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31289959 tcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgc 31290053  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 53 - 269
Target Start/End: Complemental strand, 27421275 - 27421059
Alignment:
Q  53 gagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatg 152  Q
    |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  27421275 gagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatg 27421176  T
Q  153 tttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcg 252  Q
    ||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||  |||||||||| | || ||| |||||  ||    
T  27421175 ttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcg 27421076  T
Q  253 gtgatgagtgctgattt 269  Q
    |||||||||||||||||    
T  27421075 gtgatgagtgctgattt 27421059  T

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Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 26652118 - 26652300
Alignment:
Q  39 aatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcg 138  Q
    ||||||||| || || |||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  26652118 aatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttg 26652217  T
Q  139 atcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct 221  Q
    ||| | |||||||||| |||||||| |||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  26652218 atctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct 26652300  T

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Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 26758086 - 26758268
Alignment:
Q  39 aatgtgtttagtatgagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcg 138  Q
    ||||||||| || || |||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |    
T  26758086 aatgtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttgatgtgatccctcaaacttttg 26758185  T
Q  139 atcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccct 221  Q
    ||| | |||||||||| |||||||| |||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||||    
T  26758186 atctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatatccct 26758268  T

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Target: chr6; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 26632715 - 26632865
Alignment:
Q  96 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 195  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26632715 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26632814  T
Q  196 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 246  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26632815 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26632865  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 26738691 - 26738841
Alignment:
Q  96 gattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaac 195  Q
    |||| ||||||||||||||||||| | |||||| |||| ||  ||||||||||||| || | ||||||  ||||||| ||||||||||||||||||||||    
T  26738691 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26738790  T
Q  196 acccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatc 246  Q
    |||||||||||||||||| |||||||  | |||||||| ||||||||||||    
T  26738791 acccgaccttcagcttcagtatccctggtatctgcatcctaatctttgatc 26738841  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 31394770 - 31394831
Alignment:
Q  157 cagttccactcactgacgcagtggtgg-aaacatcacaacacccgaccttcagcttcaatat 217  Q
    ||||||| | ||||| ||||||||||| |||| |||||||||| ||||||||||||||||||    
T  31394770 cagttccccgcactgtcgcagtggtggtaaacgtcacaacacctgaccttcagcttcaatat 31394831  T

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Target: scaffold0003 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 53 - 269
Target Start/End: Original strand, 66088 - 66304
Alignment:
Q  53 gagacttttacgagatagacttcctaaccagctcgattgtgaggattccctatggacattccttgacgcgatccctcaaactttcgatcccggtcaaatg 152  Q
    |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  66088 gagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttgacacgatccctcaaactttcaatcccggtcaaatg 66187  T
Q  153 tttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgtaatctttgatcccgtcg 252  Q
    ||  |  |||  ||||||||| || |||  |||||||||||||||||||||||||||||||||||||||  |||||||||| | || ||| |||||  ||    
T  66188 ttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatccctggtttctgcatcatcatattttatcccagcg 66287  T
Q  253 gtgatgagtgctgattt 269  Q
    |||||||||||||||||    
T  66288 gtgatgagtgctgattt 66304  T

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