View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_25 (Length: 279)
Name: NF12679_low_25
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 44227448 - 44227695
Alignment:
| Q |
16 |
tatatatcagtcccttccatttttgctgttatgaaacagcttcaacacaagcttgtgtgtttcttatttttctttttaagacaatgttattatgaattga |
115 |
Q |
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| T |
44227448 |
tatatatcagtcccttccatttttgctgttatgaaacagctttaacacaagcttgtgtgtttctgatttttctttttaagacaatgttattatgaattga |
44227547 |
T |
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| Q |
116 |
acccaaacaataaactaaatgaagtgtagaatagaatataatgaaagaattaaagaatgatgaatggnnnnnnncttgttgtattgatgtttctttgtgg |
215 |
Q |
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| T |
44227548 |
acccaaacaataaactaaatgaagtg-----tagaatataatgaaagaatgaaagaatgatgaatggaaaaaaacttgttgtattgatgtttctttgtgg |
44227642 |
T |
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| Q |
216 |
aaaaggaaaatgaatatggaatgagaaaacatgtttgtatttatactacctttg |
269 |
Q |
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| T |
44227643 |
aaaagg-aaatgaatatggaatgagaaaacatgtttgtatatatactacctttg |
44227695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 44215290 - 44215528
Alignment:
| Q |
16 |
tatatatcagtcccttccatttttgctgttatgaaacagcttcaacacaagcttgtgtgtttcttatttttctttttaagacaat---gttattatgaat |
112 |
Q |
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||||||||||||||||||||||||||| || | |||||| ||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||| |
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| T |
44215290 |
tatatatcagtcccttccatttttgct-ttgttcaacagcctcaacacaagcttgtgt--ttcttatttttcttttcaaggcaatactgttattatgaat |
44215386 |
T |
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| Q |
113 |
tgaacccaaacaataaactaaatgaagtgtagaatagaatataatgaaagaattaaagaatgatgaatggnnnnnnncttgttgtattgatgtttctttg |
212 |
Q |
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|||||| ||||| ||||||||||| |||| | ||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||||| |
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| T |
44215387 |
tgaaccaaaacattaaactaaatggagtg-----tcgaataaaatgaaagaatcaaagaatgatgaaagg-aaaaaacttgttgtattgatgtttctttg |
44215480 |
T |
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| Q |
213 |
tggaaaaggaaaatgaatatggaatgagaaaacatgtttgtatttatac |
261 |
Q |
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| T |
44215481 |
tggcaaagg-aaatgaatatggaatgagaaaacatgtttgtatttatac |
44215528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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