View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_low_26 (Length: 273)

Name: NF12679_low_26
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_low_26
NF12679_low_26
[»] chr4 (3 HSPs)
chr4 (7-262)||(17225219-17225475)
chr4 (7-135)||(5373861-5373989)
chr4 (51-112)||(40225492-40225554)
[»] chr5 (2 HSPs)
chr5 (7-135)||(20319507-20319635)
chr5 (33-112)||(10548194-10548274)
[»] chr1 (7 HSPs)
chr1 (47-135)||(41956048-41956136)
chr1 (16-109)||(11398254-11398349)
chr1 (51-112)||(52935172-52935234)
chr1 (51-112)||(52942807-52942869)
chr1 (51-112)||(52946215-52946277)
chr1 (47-112)||(18136436-18136503)
chr1 (44-104)||(31230344-31230405)
[»] chr7 (2 HSPs)
chr7 (7-112)||(47762075-47762181)
chr7 (23-87)||(20290667-20290731)
[»] chr3 (2 HSPs)
chr3 (15-112)||(7051112-7051209)
chr3 (44-107)||(30174411-30174475)
[»] chr2 (1 HSPs)
chr2 (7-112)||(42735282-42735390)
[»] scaffold0590 (1 HSPs)
scaffold0590 (33-112)||(5017-5099)
[»] chr8 (1 HSPs)
chr8 (201-260)||(39948169-39948228)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 17225219 - 17225475
Alignment:
Q  7 gagaagcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatatt 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225219 gagaatcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatatt 17225318  T
Q  107 gcccctgattgctctttgactcattacaggaaagtagtctaatgactgaataatatttttttgttttgaagaggacataatac-nnnnnnnnnngttctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  17225319 gcccctgattgctctttgactcattacaggaaagtagtctaatgactgaataatatttttttgttttgaagaggacataatactttttttttttgttctc 17225418  T
Q  206 tcagttcttccgtatgtagttgtgagcttctgatttactttaatgcttttatgatgt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17225419 tcagttcttccgtatgtagttgtgagcttctgatttactttaatgcttttatgatgt 17225475  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 5373861 - 5373989
Alignment:
Q  7 gagaagcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatatt 106  Q
    ||||| ||||||||||||||||||||||||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5373861 gagaatcagagagagaagaagagtttcatcacacatttttcatgcttatttccttgacttttctcttatttataagggtcctatttctatttcccatatt 5373960  T
Q  107 gcccctgattgctctttgactcattacag 135  Q
    ||||||||||||||||||||| |||||||    
T  5373961 gcccctgattgctctttgacttattacag 5373989  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 40225492 - 40225554
Alignment:
Q  51 cttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    |||| |||||||||||||||| ||||||| ||||||| |||| |||||||||||| |||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgcccct 40225554  T

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Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 20319507 - 20319635
Alignment:
Q  7 gagaagcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatatt 106  Q
    ||||| ||||||||||||||||||||||||||| || || |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  20319507 gagaatcagagagagaagaagagtttcatcacacatatttcatgcttatttcctggacttttctcttatttataagggtcctatttctatttcccatatt 20319606  T
Q  107 gcccctgattgctctttgactcattacag 135  Q
    ||||||||||||||||||||| |||||||    
T  20319607 gcccctgattgctctttgacttattacag 20319635  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 10548274 - 10548194
Alignment:
Q  33 catcacatatcttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    ||||||| || |||||| |||| |||||||||||||||| ||||||||| ||||| |||| |||||| ||||| |||||||    
T  10548274 catcacacatattccatacttatttccttggcttttctcatatttataaaggtccatattcctattttccataatgcccct 10548194  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 41956136 - 41956048
Alignment:
Q  47 catgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatattgcccctgattgctctttgactcattacag 135  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41956136 catgcctatttccttgacttttctcttatttataagggtcctatttctatttcccatattgtccttgattgctctttgactcattacag 41956048  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 11398254 - 11398349
Alignment:
Q  16 agagagaagaagagtttcatcacatatctt-ccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcc 109  Q
    ||||||||||||||||||||||||||| || |||| |||| |||||||||||||||| ||||||||||||||| |||| |||||| ||||| ||||    
T  11398254 agagagaagaagagtttcatcacatatttttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcc 11398349  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 52935234 - 52935172
Alignment:
Q  51 cttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    |||| |||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52935172  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 52942869 - 52942807
Alignment:
Q  51 cttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    |||| |||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52942807  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 52946277 - 52946215
Alignment:
Q  51 cttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    |||| |||||||||||||||| ||||||||||||||| |||| |||||||||||| |||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52946215  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 18136503 - 18136436
Alignment:
Q  47 catgcttacttccttggctttt-ctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    |||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||||||| |||||||    
T  18136503 catgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgcccct 18136436  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 31230344 - 31230405
Alignment:
Q  44 ttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccata 104  Q
    ||||||||||| | | |||| ||||||| ||||||||||||||| |||| ||||||||||||    
T  31230344 ttccatgcttattccattggtttttctcatatttataagggtccatattcctatttcccata 31230405  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 47762181 - 47762075
Alignment:
Q  7 gagaagcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatat 105  Q
    ||||| |||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||| ||||||||||||||| |||| |||||| |||||     
T  47762181 gagaatcagagagagaagaagagtttcatcacatattttcaatccttatttccttggcttttctcatatttataagggtccatattcctattttccataa 47762082  T
Q  106 tgcccct 112  Q
    |||||||    
T  47762081 tgcccct 47762075  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 20290667 - 20290731
Alignment:
Q  23 agaagagtttcatcacatatcttccatg-cttacttccttggcttttctcttatttataagggtcc 87  Q
    |||||| ||||||||||||| ||||||| |||| || ||||||||| |||||||||||||||||||    
T  20290667 agaagaatttcatcacatattttccatgtcttatttgcttggcttt-ctcttatttataagggtcc 20290731  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 7051209 - 7051112
Alignment:
Q  15 gagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 112  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  7051209 gagagagaagaagagtttcatcacatattttccatccttatttccttgg-atttctcttatttataagggtccatattcctttttcccatattacccct 7051112  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 30174411 - 30174475
Alignment:
Q  44 ttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattg 107  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||| ||  |||||||||||    
T  30174411 ttccatgcttatttccttggcttttctcttatttataaggatccatattccttattcccatattg 30174475  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 42735390 - 42735282
Alignment:
Q  7 gagaagcagagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttata--agggtcc-tatttctatttcccat 103  Q
    ||||| ||||||||||| |||||||||||||||||| || |||||||| ||||||| |||||||| ||||||||  ||||||| |||| |||||||||||    
T  42735390 gagaatcagagagagaataagagtttcatcacatatttttcatgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccat 42735291  T
Q  104 attgcccct 112  Q
    | |||||||    
T  42735290 aatgcccct 42735282  T

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Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 5017 - 5099
Alignment:
Q  33 catcacatatcttccatgcttacttccttggcttttctcttatt--tataagggtcc-tatttctatttcccatattgcccct 112  Q
    ||||||| || || |||||||| |||||||||||||||| ||||  ||||||||||| |||| |||||||||||| |||||||    
T  5017 catcacacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattcctatttcccataatgcccct 5099  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 39948228 - 39948169
Alignment:
Q  201 ttctctcagttcttccgtatgtagttgtgagcttctgatttactttaatgcttttatgat 260  Q
    |||||||| || ||| ||||||||||||||||||||||||||| || ||| || ||||||    
T  39948228 ttctctcaattattcggtatgtagttgtgagcttctgatttacattcatgattgtatgat 39948169  T

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