View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_27 (Length: 273)
Name: NF12679_low_27
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 39319414 - 39319159
Alignment:
| Q |
18 |
atgtaatccaaaattgcttcaatgcggttgttttaattgttcacgagccacaagatatatctaatgattagattcattaaaacaattggtacaactttct |
117 |
Q |
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| T |
39319414 |
atgtaatccaaaattgcttcaatgcggttgttttaattgttcacgagccacaagatatatcgaatgattagattcgttaaaacaattggtacaactttct |
39319315 |
T |
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| Q |
118 |
cccttactacttgtttcttgtttgtcaccagaccaagtgacaacgtcacataaaattcagtctaaaattcaaactcaagtgaaggaaaaaatctacatag |
217 |
Q |
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| T |
39319314 |
cctttactacttgtttcttgtttgtcacccgacgaagtgacaacgtcacataaaattcagtctaaaattcaaactcaagtgaaggaaaaaatctacatag |
39319215 |
T |
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| Q |
218 |
ttttggacttttggaagtgtacttttaaattacataatttgtttgaaagttgatat |
273 |
Q |
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| T |
39319214 |
ttttggacttttggaagtgtacttttaaattacataatttgtttgaaagttgatat |
39319159 |
T |
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