View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_31 (Length: 255)
Name: NF12679_low_31
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 7924615 - 7924859
Alignment:
| Q |
10 |
cagagacaagaaatggaacgagtacattaacatcacgattaaatccaaaatcagtggcccacaatcttagcttctctcagtcatcgtctttgaattctct |
109 |
Q |
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| T |
7924615 |
cagagacaagaaatggaacgagtacattaacatcacgattaaatccaaaatcagtg-cccacaatcttagcttctctcagtcatcgtctttgaattctct |
7924713 |
T |
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| Q |
110 |
gatcaaatattaaacacaaaatagtgttagcaattttcatggttattgcaaaacgtgtgccaaatgacaaaattaccatggtatacataatgactaaact |
209 |
Q |
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| T |
7924714 |
gatcaaatattaaacacaaaatagtgttagcaattttcatggttattgcaaaacgtgtgccaaatgacaaaattaccatggtatacataatgactaaact |
7924813 |
T |
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| Q |
210 |
aattcattattaaattattacaaaggggaaaataagattgaacacc |
255 |
Q |
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| T |
7924814 |
aattcattattaaattattacaaaggggaaaataagattgaacacc |
7924859 |
T |
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