View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_34 (Length: 250)
Name: NF12679_low_34
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 5006120 - 5005880
Alignment:
| Q |
10 |
agatgaaccccaaggagctgtaaacaaggtctcaaactttatttcttataagttacatgtacattttacacacttgaatagctcacaataatgtctaaaa |
109 |
Q |
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| T |
5006120 |
agatgaatcccaaggagctgtaaacaaggtctcaaactttatttcttataagttacatgtacattttacacacttgaatagctgacaataatgtctaaaa |
5006021 |
T |
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| Q |
110 |
atacaagatgatatcaaagtcacgcacatagttacaatggcaaaagtagaatattgacatggacactaacatgtccataccaataatgatgatatgagaa |
209 |
Q |
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| T |
5006020 |
atacaagataatatcaaagtcacgcacatagttaaaatggcaaaagtagaacattgacatggacactaacatgtccataccaataatgatgatatgagaa |
5005921 |
T |
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| Q |
210 |
aatagaataatcgaatgtaaactatatttgtaggtgtttgc |
250 |
Q |
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| T |
5005920 |
aatagaataatcgaatgtaaactatatttgtaggtgtttgc |
5005880 |
T |
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