View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12679_low_36 (Length: 240)
Name: NF12679_low_36
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_36 |
 | |
|
| [»] scaffold0489 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 1417898 - 1418114
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1417898 |
agattgacatctcaacactaaaatccacaatgttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcactgt |
1417997 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnncattaccaactctcgtctcatcatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1417998 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcatt |
1418097 |
T |
|
| Q |
211 |
gatctcgcatctctgct |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1418098 |
gatctcgcatctctgct |
1418114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 30333581 - 30333367
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30333581 |
agattgacatctcaacactaaaatccacaatgttcatagtcccac-taaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
30333483 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30333482 |
gaatgctcgaattcccaatattga-aaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
30333384 |
T |
|
| Q |
212 |
atctcgcatctctgcta |
228 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30333383 |
atctcgcatctctgcta |
30333367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 25915180 - 25915398
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25915180 |
agattgacatctcaacactaaaatccacaatgttcatagtcccagctaaacttttattgataatatcaaaatcaaatcataacaacaaaatcctcattgt |
25915279 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattg-aaaaacctaaagaatga----nnnnnnnncattaccaactctcgtctcat |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25915280 |
gaatgctcaaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaaacctaaagaatgattttttttttctcattaccaactctcgtctcat |
25915379 |
T |
|
| Q |
207 |
cattgatctcgcatctctg |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
25915380 |
cattgatctcgcatctctg |
25915398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 25264825 - 25265038
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25264825 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgt |
25264924 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25264925 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
25265024 |
T |
|
| Q |
212 |
atctcgcatctctg |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25265025 |
atctcgcatctctg |
25265038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 33294995 - 33294787
Alignment:
| Q |
18 |
acatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33294995 |
acatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattaataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgc |
33294896 |
T |
|
| Q |
118 |
tcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnncattaccaactctcgtctcatcattgatctc |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33294895 |
tcgaattcccaatattaaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcattgatctc |
33294796 |
T |
|
| Q |
217 |
gcatctctg |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
33294795 |
gcatctctg |
33294787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 33258346 - 33258561
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33258346 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgt |
33258445 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33258446 |
gaatgctcgaattcccaatattgaaaaaattcacaaaactctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
33258545 |
T |
|
| Q |
212 |
atctcgcatctctgct |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33258546 |
atctcgcatctctgct |
33258561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 33278518 - 33278733
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33278518 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgt |
33278617 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33278618 |
gaatgctcgaattcccaatattgaaaaaattcacaaaactctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
33278717 |
T |
|
| Q |
212 |
atctcgcatctctgct |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33278718 |
atctcgcatctctgct |
33278733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 28920214 - 28920006
Alignment:
| Q |
20 |
atctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctc |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28920214 |
atctcaacactaaaatccacaatgttcatagtcccac-taaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctc |
28920116 |
T |
|
| Q |
120 |
gaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnncattaccaactctcgtctcatcattgatctcg |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28920115 |
gaatttccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatgttttttttcattaccaactctcgtctcatcattgatctcg |
28920016 |
T |
|
| Q |
218 |
catctctgct |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
28920015 |
catctctgct |
28920006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 36146490 - 36146278
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36146490 |
agattgacatctcaacactaaaatccacaatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataataacaaaatcctcattgt |
36146391 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36146390 |
gaatactcgaattcccaatattga-aaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
36146292 |
T |
|
| Q |
212 |
atctcgcatctctg |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36146291 |
atctcgcatctctg |
36146278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 7654835 - 7654621
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7654835 |
agattgacatctcaacactaaaatccacaatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
7654736 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnncattaccaactctcgtctcatcat |
209 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7654735 |
gaatactcgaattcccaatattga-aaaattcacaaaattcttaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcat |
7654637 |
T |
|
| Q |
210 |
tgatctcgcatctctg |
225 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7654636 |
tgatctcgcatctctg |
7654621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 19056772 - 19056986
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19056772 |
agattgacatctcaacactaaaatctacaatgttcacagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
19056871 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnncattaccaactctcgtctcatcatt |
210 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19056872 |
gaatgctcaaatttccaatattgaaaaaattcaaaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcatt |
19056971 |
T |
|
| Q |
211 |
gatctcgcatctctg |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19056972 |
gatctcgcatctctg |
19056986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 24088862 - 24088702
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcata--gtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcatt |
109 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | |||| ||||||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
24088862 |
agattgacatctcaacaccaaaatccacaatgtccatatagtcctaacaaaactcttattgataatatcataatcaaattataacaaaaaaatcctcatt |
24088763 |
T |
|
| Q |
110 |
gtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaa |
170 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
24088762 |
aagaatgcttgaattcccaattttgaaaaaattacgaaaattccaaaattgaaaaacctaa |
24088702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 53355584 - 53355798
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53355584 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgt |
53355683 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53355684 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-tttttttcattaccaactctcgtctcatcattg |
53355782 |
T |
|
| Q |
212 |
atctcgcatctctgct |
227 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53355783 |
atctcgcatctctgct |
53355798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 19995631 - 19995414
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19995631 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
19995532 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnncattaccaactctcgtctcatcat |
209 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19995531 |
gaatgctcaaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcat |
19995432 |
T |
|
| Q |
210 |
tgatctcgcatctctgct |
227 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19995431 |
tgatctcgcatctctgct |
19995414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 55948510 - 55948294
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55948510 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
55948411 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga---nnnnnnnncattaccaactctcgtctcatca |
208 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55948410 |
gaatactcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttgttttcattaccaactctcgtctcatca |
55948311 |
T |
|
| Q |
209 |
ttgatctcgcatctctg |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
55948310 |
ttgatctcgcatctctg |
55948294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 44252093 - 44252307
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44252093 |
agattgacatctcaacactaaaatccacaatgttcatagtctcagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
44252192 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnncattaccaactctcgtctcatcatt |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
44252193 |
gaatgatcgaattcccaatattgaaaaaattcacaaaattctcaaattaaaaaacctaaagaatgatttttttttcattaccaactcttgtctcatcatt |
44252292 |
T |
|
| Q |
211 |
gatctcgcatctctg |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44252293 |
gatctcgcatctctg |
44252307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 39653675 - 39653829
Alignment:
| Q |
22 |
ctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcga |
121 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||| | ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| | |
|
|
| T |
39653675 |
ctcaacactaaaatccacaatgttcatagtcccaacaaaattcttattgataatatcataatcaaattataacaacaaagtcctcattgagaatgctcaa |
39653774 |
T |
|
| Q |
122 |
attcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatg |
176 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
39653775 |
attctcaatattgaaaaaattcacaaaacttccaaattgaaaaacctaaagaatg |
39653829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 31393203 - 31392990
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31393203 |
agattgacatctcaacactaaaatccacaatgttcatagtctcaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
31393104 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31393103 |
gaatgctcgaatttccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
31393004 |
T |
|
| Q |
212 |
atctcgcatctctg |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31393003 |
atctcgcatctctg |
31392990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 45276892 - 45277105
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45276892 |
agattgacatcttaacactaaaatccacaatgttcatagtcccaactaaaattttattgataatatcgaaatcaaattataacaacaaaatcctcattgt |
45276991 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45276992 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattg |
45277091 |
T |
|
| Q |
212 |
atctcgcatctctg |
225 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45277092 |
atctcgcatctctg |
45277105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 8231167 - 8230954
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8231167 |
agattgacatctcaacactaaaattcacaatgttcatagtctcaaataaacttttattgttaatatcaaaatcaaattataacaacaaaatcctcattgt |
8231068 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnncattaccaactctcgtctcatcatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8231067 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttcattaccaactctcgtctcatcatt |
8230968 |
T |
|
| Q |
211 |
gatctcgcatctct |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8230967 |
gatctcgcatctct |
8230954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 32882260 - 32882053
Alignment:
| Q |
17 |
gacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32882260 |
gacatctcaacactaaaatccacaatgttcatagtccgaactaattttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatg |
32882161 |
T |
|
| Q |
117 |
ctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga-nnnnnnnncattaccaactctcgtctcatcattgatct |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32882160 |
ctcgaactcccaatattgaaaaaattcacaaaattctaaaattgaaaaacctaaagaatgatttttttttcattacaaactctcgtctcatcattgatct |
32882061 |
T |
|
| Q |
216 |
cgcatctc |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
32882060 |
cgcatctc |
32882053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 21716163 - 21715994
Alignment:
| Q |
58 |
taaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaa |
157 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21716163 |
taaacttttattgataatatcgaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaa |
21716064 |
T |
|
| Q |
158 |
ttgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattgatctcgcatctctgct |
227 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21716063 |
ttgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattgatctcgcatctctgct |
21715994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 225
Target Start/End: Original strand, 40028994 - 40029155
Alignment:
| Q |
66 |
tattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40028994 |
tattgataatatcaaaatcaaattataacaacaaaatcctcattatgaatgctcgaatttccaatattg-aaaaattcacaaaattctcaaattgaaaaa |
40029092 |
T |
|
| Q |
166 |
cctaaagaatga---nnnnnnnncattaccaactctcgtctcatcattgatctcgcatctctg |
225 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40029093 |
cctaaagaatgatttttttttttcattaccaactctcgtctcatcattgatctcacatctctg |
40029155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 14108774 - 14108686
Alignment:
| Q |
83 |
tcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaa |
171 |
Q |
| |
|
|||||||| ||||||||||| | || || |||||| | ||||||||| ||||| ||||| | ||||||| | |||| ||||||||||| |
|
|
| T |
14108774 |
tcaaattacaacaacaaaattcccaatgagaatgcccagattcccaattttgaagaaatttataaaattccctaattaaaaaacctaaa |
14108686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 14418731 - 14418643
Alignment:
| Q |
83 |
tcaaattataacaacaaaatcctcattgtgaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaa |
171 |
Q |
| |
|
|||||||| ||||||||||| | || || |||||| | ||||||||| ||||| ||||| | ||||||| | |||| ||||||||||| |
|
|
| T |
14418731 |
tcaaattacaacaacaaaattcccaatgagaatgcccagattcccaattttgaagaaatttataaaattccctaattaaaaaacctaaa |
14418643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 19083724 - 19083512
Alignment:
| Q |
17 |
gacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatg |
116 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19083724 |
gacaactcaacactaaaatccacaatgttcatagtcataaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatg |
19083625 |
T |
|
| Q |
117 |
ctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnncattaccaactctcgtctcatcattgatc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19083624 |
ctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcattgatc |
19083525 |
T |
|
| Q |
215 |
tcgcatctctgct |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19083524 |
tcgcatctctgct |
19083512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 1841315 - 1841106
Alignment:
| Q |
18 |
acatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaatgc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1841315 |
acatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaataaaattataacaacaaaatcctcattgtgaatgc |
1841216 |
T |
|
| Q |
118 |
tcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgannnnnnnncattaccaactctcgtctcatcattgatctcg |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1841215 |
tcgaattcccaatattgaaacaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttcattaccaactctcgtctcatcattgatctcg |
1841116 |
T |
|
| Q |
218 |
catctctgct |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
1841115 |
catctctgct |
1841106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 33734093 - 33733875
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33734093 |
agattgacatctcaacactaaaatccacaatgttcatagtcccaactaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
33733994 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga---nnnnnnnncattaccaactctcgtctcatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33733993 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgatttttttttttcattaccaactctcgtctcatca |
33733894 |
T |
|
| Q |
209 |
ttgatctcgcatctctgct |
227 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33733893 |
ttgatctcgcatctctgct |
33733875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 53528463 - 53528678
Alignment:
| Q |
12 |
agatggacatctcaacactaaaatccacaattttcatagtcctaaataaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53528463 |
agattgacatctcaacactaaaatccacaatgttcatagtcccagctaaacttttattgataatatcaaaatcaaattataacaacaaaatcctcattgt |
53528562 |
T |
|
| Q |
112 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga--nnnnnnnncattaccaactctcgtctcatcat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53528563 |
gaatgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttcattaccaactctcgtctcatcat |
53528662 |
T |
|
| Q |
210 |
tgatctcgcatctctg |
225 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53528663 |
tgatctcgcatctctg |
53528678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 6467 - 6251
Alignment:
| Q |
17 |
gacatctcaacactaaaatccacaattttcatagtcctaaat-aaactttt-attgataatatcaaaatcaaattataacaacaaaatcctcattgtgaa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6467 |
gacaactcaacactaaaatccacaatgttcatagtcataaattaaactttttattgataatatcaaaatcaaattataacaacaaaatcctcattgtgaa |
6368 |
T |
|
| Q |
115 |
tgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatga----nnnnnnnncattaccaactctcgtctcatcatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6367 |
tgctcgaattcccaatattgaaaaaattcacaaaattctcaaattgaaaaacctaaagaatgattttttttttttcattaccaactctcgtctcatcatt |
6268 |
T |
|
| Q |
211 |
gatctcgcatctctgct |
227 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6267 |
gatctcgcatctctgct |
6251 |
T |
|
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