View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_39 (Length: 231)
Name: NF12679_low_39
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 394461 - 394259
Alignment:
| Q |
19 |
tgagacacaaccaaccactaagagttagagatcctagtatctcccttccctaaccaataataaaaataacctgattgtttacatgtgccatcctttatcc |
118 |
Q |
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| T |
394461 |
tgagacacaaccaaccactaagaattagagatcctagtatctcccttccctaaccaataataaaaataacctgattgtttacatgtgccatcctttatcc |
394362 |
T |
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| Q |
119 |
atttagacacacagcacactaacaaatacatatgggcctaattatttgggcctactaacagcttccaccttagaactcgcctcacaaatacatctgccct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
394361 |
atttagacacacagcacactaacaaatacatatgggcctaattatttgggcctactaacagcttccaccttagaactcgcctcacaaatacatctgcctt |
394262 |
T |
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| Q |
219 |
ttg |
221 |
Q |
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||| |
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| T |
394261 |
ttg |
394259 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 22775987 - 22775905
Alignment:
| Q |
86 |
aacctgattgtttacatgtgccatcctttatccatt--tagacacacagcacactaacaaatacatatgggcctaattatttg |
166 |
Q |
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||||| || |||||||| |||||||||| || ||| || ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22775987 |
aacctaatggtttacatatgccatccttattctattcataaacacacaacacactaacaaatacatatgggcctaattatttg |
22775905 |
T |
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