View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12679_low_4 (Length: 582)

Name: NF12679_low_4
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12679_low_4
NF12679_low_4
[»] chr4 (15 HSPs)
chr4 (277-469)||(21390955-21391147)
chr4 (276-469)||(44275705-44275898)
chr4 (273-471)||(6112627-6112825)
chr4 (277-468)||(3672274-3672466)
chr4 (276-469)||(28093094-28093288)
chr4 (279-469)||(35544911-35545102)
chr4 (277-468)||(49243815-49244006)
chr4 (276-469)||(7217764-7217958)
chr4 (276-468)||(45829256-45829448)
chr4 (277-469)||(46192358-46192551)
chr4 (277-469)||(52191200-52191392)
chr4 (339-463)||(51038768-51038893)
chr4 (337-463)||(54849793-54849919)
chr4 (399-469)||(25437007-25437077)
chr4 (385-463)||(36157840-36157918)
[»] chr1 (9 HSPs)
chr1 (276-468)||(34307136-34307329)
chr1 (276-464)||(2509028-2509217)
chr1 (279-470)||(39249864-39250056)
chr1 (276-468)||(46901733-46901926)
chr1 (276-468)||(28647353-28647545)
chr1 (279-469)||(19258674-19258864)
chr1 (277-450)||(9642866-9643039)
chr1 (345-464)||(29099821-29099939)
chr1 (385-463)||(10146971-10147049)
[»] chr2 (11 HSPs)
chr2 (275-469)||(16089821-16090014)
chr2 (276-468)||(33732569-33732761)
chr2 (275-465)||(44958116-44958307)
chr2 (274-468)||(36315561-36315756)
chr2 (280-469)||(3830900-3831087)
chr2 (273-477)||(37498858-37499065)
chr2 (326-469)||(14572994-14573137)
chr2 (275-468)||(6376236-6376424)
chr2 (277-469)||(37914236-37914428)
chr2 (334-468)||(24137149-24137287)
chr2 (277-460)||(41188777-41188961)
[»] chr8 (15 HSPs)
chr8 (275-468)||(30432339-30432532)
chr8 (277-468)||(42162598-42162790)
chr8 (275-468)||(36189216-36189408)
chr8 (276-465)||(18184556-18184745)
chr8 (275-471)||(31318802-31318999)
chr8 (277-469)||(10203663-10203856)
chr8 (275-465)||(12665347-12665539)
chr8 (285-467)||(44081781-44081964)
chr8 (277-462)||(33726017-33726203)
chr8 (275-470)||(43186025-43186220)
chr8 (317-448)||(42668821-42668952)
chr8 (278-420)||(38845023-38845165)
chr8 (377-463)||(31547-31633)
chr8 (277-463)||(3690602-3690788)
chr8 (327-446)||(35849502-35849623)
[»] chr7 (26 HSPs)
chr7 (276-468)||(45782658-45782851)
chr7 (277-469)||(36346564-36346756)
chr7 (276-468)||(42220962-42221154)
chr7 (276-471)||(26972201-26972397)
chr7 (276-468)||(28307493-28307686)
chr7 (275-462)||(31148296-31148483)
chr7 (277-470)||(7700476-7700670)
chr7 (276-468)||(34108426-34108619)
chr7 (277-468)||(7699882-7700074)
chr7 (277-468)||(7700080-7700272)
chr7 (277-468)||(7700278-7700470)
chr7 (273-465)||(34828069-34828260)
chr7 (276-468)||(13108148-13108339)
chr7 (275-468)||(5811161-5811354)
chr7 (275-462)||(23980137-23980324)
chr7 (291-468)||(30887700-30887877)
chr7 (329-464)||(21807374-21807509)
chr7 (268-426)||(46475066-46475225)
chr7 (276-447)||(36957450-36957620)
chr7 (319-468)||(15020282-15020428)
chr7 (334-463)||(38321014-38321143)
chr7 (339-429)||(20086690-20086780)
chr7 (276-370)||(29953570-29953665)
chr7 (373-426)||(42950109-42950162)
chr7 (275-352)||(42950034-42950111)
chr7 (431-463)||(42950157-42950189)
[»] chr3 (21 HSPs)
chr3 (273-470)||(43999987-44000185)
chr3 (277-469)||(21559560-21559753)
chr3 (275-469)||(51339781-51339973)
chr3 (277-469)||(36370337-36370530)
chr3 (279-469)||(36749405-36749596)
chr3 (277-469)||(46111943-46112136)
chr3 (278-468)||(22894680-22894870)
chr3 (276-468)||(34749896-34750089)
chr3 (276-469)||(30735494-30735687)
chr3 (277-468)||(38231293-38231484)
chr3 (276-465)||(48200688-48200878)
chr3 (272-471)||(39467096-39467295)
chr3 (370-468)||(29460660-29460758)
chr3 (370-468)||(29471512-29471610)
chr3 (277-470)||(39072278-39072466)
chr3 (339-469)||(50966130-50966256)
chr3 (339-469)||(51069265-51069391)
chr3 (277-460)||(20856153-20856334)
chr3 (273-376)||(29472901-29473004)
chr3 (334-446)||(53638157-53638269)
chr3 (375-461)||(29820397-29820483)
[»] scaffold0062 (1 HSPs)
scaffold0062 (277-464)||(6722-6910)
[»] chr5 (17 HSPs)
chr5 (277-468)||(39370927-39371119)
chr5 (277-470)||(13347126-13347320)
chr5 (276-469)||(40887940-40888134)
chr5 (277-469)||(1815619-1815808)
chr5 (277-468)||(2237276-2237468)
chr5 (275-469)||(27553372-27553565)
chr5 (332-470)||(9408094-9408232)
chr5 (276-457)||(14831555-14831737)
chr5 (276-429)||(31800597-31800750)
chr5 (334-471)||(17225316-17225451)
chr5 (277-468)||(19596067-19596258)
chr5 (372-468)||(33404531-33404627)
chr5 (278-469)||(4300544-4300735)
chr5 (276-397)||(42683670-42683792)
chr5 (277-459)||(41003850-41004031)
chr5 (337-471)||(19124532-19124664)
chr5 (334-465)||(12164254-12164388)
[»] chr6 (7 HSPs)
chr6 (272-469)||(3986900-3987097)
chr6 (276-469)||(3118045-3118239)
chr6 (278-468)||(14022934-14023124)
chr6 (276-468)||(24208444-24208636)
chr6 (276-468)||(13697569-13697760)
chr6 (274-469)||(15345656-15345849)
chr6 (439-469)||(7674598-7674628)
[»] scaffold0043 (1 HSPs)
scaffold0043 (275-464)||(87160-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (403-441)||(5943-5981)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 21390955 - 21391147
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||||| |||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttc 21391054  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  21391055 atctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 276 - 469
Target Start/End: Complemental strand, 44275898 - 44275705
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||||||||||||| |||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
     ||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  44275798 aatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 273 - 471
Target Start/End: Complemental strand, 6112825 - 6112627
Alignment:
Q  273 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 372  Q
    |||||||||||||||| |||||||  ||||||||||||   || ||||||   ||||| |||||||||||| ||||||||||||||||||||||| || |    
T  6112825 aataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctt 6112726  T
Q  373 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 471  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  6112725 tttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctctaa 6112627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||| ||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 276 - 469
Target Start/End: Original strand, 28093094 - 28093288
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||| | ||||||||||||   || ||||||  | ||||| |||||||||||| |||| ||||||||||||||||||||| |||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttt 28093193  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28093194 tcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 279 - 469
Target Start/End: Complemental strand, 35545102 - 35544911
Alignment:
Q  279 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattttca 377  Q
    |||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  378 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    | ||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||||  |||||| | |||||||||||||  || ||||||   ||||| |||||||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 276 - 469
Target Start/End: Complemental strand, 7217958 - 7217764
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| || ||||| |||||||||||||  || |||||| | ||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttt 7217859  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    | ||||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  7217858 ttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 45829256 - 45829448
Alignment:
Q  276 aggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||||| |||||| ||||||| ||| |||||| | ||| ||  |||||||||||| | |||| |||||| || ||||||| |||    
T  45829256 aggaaaaagataggtagacacccttttttgatacacc-tttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcaccccttt 45829354  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  45829355 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 277 - 469
Target Start/End: Complemental strand, 46192551 - 46192358
Alignment:
Q  277 ggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| |||||| |||||||  || |||||| | |||||   |||||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
     |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 52191200 - 52191392
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||| || ||||||| ||||| |||||||  | ||||||| | ||| ||||||| |||||||||||||||  ||||| ||||||| |   | |     
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctctt 52191299  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||  ||||||||||||||||||||| |||||||| | ||||||| ||| ||||||| |||||||||||||||||| |||||||||| |||||    
T  52191300 atcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 339 - 463
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  339 tattttagtaattttacatcatatcatcaccca-ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 437  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||   |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  438 gccacctaaggtggttcatgtataag 463  Q
    ||||||||||||||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 463
Target Start/End: Complemental strand, 54849919 - 54849793
Alignment:
Q  337 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 436  Q
    ||||||||| |||||| |||||| ||||||| ||  | ||||||||||||||||| |||||||||| |||||||| || |||||||| | |||  |||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgta 54849820  T
Q  437 tgccacctaaggtggttcatgtataag 463  Q
     || | |||||||||||||||||||||    
T  54849819 cgctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 25437007 - 25437077
Alignment:
Q  399 tcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||| |||||||| ||||| ||| ||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataagggctct 25437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 463
Target Start/End: Complemental strand, 36157918 - 36157840
Alignment:
Q  385 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 463  Q
    |||||||||||||||||||| |||||| | ||| || |||| |||  ||||||||||||||| || || ||| ||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaaagtcgtccatatataag 36157840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 34307136 - 34307329
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| ||||||||||||||||||||||  || |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  34307236 tcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 276 - 464
Target Start/End: Complemental strand, 2509217 - 2509028
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| ||||||| ||||||||||||||  || |||||| | |||||| |||||| |||||||||||||||||||||||||| ||||| |||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttt 2509118  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 464  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  2509117 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 279 - 470
Target Start/End: Original strand, 39249864 - 39250056
Alignment:
Q  279 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttca 377  Q
    |||||||||| ||||||||||||||||||||||  || |||||| | | |||| |||||||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  378 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcta 39250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 46901733 - 46901926
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||| | |||||||||||    || |||||| | | |||| | ||| |||||| |||||||||||||||||||||||||| |||    
T  46901733 aggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttt 46901832  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46901833 tcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 28647545 - 28647353
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||||||| ||||| ||||| |  |  |||||||| |||||||||||  ||||||| |||||| |||||| |||| ||||| ||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||| ||||||||||||||||| ||  | |||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||    
T  28647445 catctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 279 - 469
Target Start/End: Original strand, 19258674 - 19258864
Alignment:
Q  279 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcat 378  Q
    |||||||||| |||||||| ||||| ||||| |  |  |||||| | |||||||||||  ||||||| |||||| |||||| |||| ||||| |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  379 ctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||| |||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  19258774 ctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 277 - 450
Target Start/End: Original strand, 9642866 - 9643039
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt-t 375  Q
    |||||||||||| ||||||  |||||| ||||| |  || || |||  |||||||| |||| | |||||||||||| |||||||||||||||||  || |    
T  9642866 ggaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtgt-agggatgttttagtaatttcacatcatatcatcacccccttct 9642964  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtg 450  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||||||| ||||||| ||||||||    
T  9642965 catctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgccatctaaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 345 - 464
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  345 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacct 444  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||||| ||||||||||||||||||  ||||| | |||||||||| ||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaaga-gtgtatgccatct 29099841  T
Q  445 aaggtggttcatgtataaga 464  Q
    ||||||||| ||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 463
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  385 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 463  Q
    ||||| |||||||| ||| |||||||| |||||||||| || ||| |||||||||||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 275 - 469
Target Start/End: Complemental strand, 16090014 - 16089821
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| ||||||||||||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||| ||||  |||    
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccaccttttt 16089915  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  16089914 t-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 33732761 - 33732569
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | ||| | ||||||||||||||||||||||||||||||||| ||||| ||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33732661 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 275 - 465
Target Start/End: Complemental strand, 44958307 - 44958116
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 373  Q
    |||||||||||||| |||||| | |||||||||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 44958208  T
Q  374 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 465  Q
    || |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44958207 tttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 274 - 468
Target Start/End: Complemental strand, 36315756 - 36315561
Alignment:
Q  274 ataggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 372  Q
    ||||||||||||||| |||||| |||||||| |||||||  || |||||| ||||||||| |||||||||||| | |||| |||||| || ||||||  |    
T  36315756 ataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctct 36315657  T
Q  373 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36315656 ttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 280 - 469
Target Start/End: Original strand, 3830900 - 3831087
Alignment:
Q  280 aaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatc 379  Q
    ||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  380 tcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 273 - 477
Target Start/End: Original strand, 37498858 - 37499065
Alignment:
Q  273 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccca 371  Q
    |||||||||||||||| |||||||| ||||| |||||||  || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  37498858 aataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccct 37498957  T
Q  372 --ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
      ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| | |||||||||  |||| ||||| || ||||||||||||    
T  37498958 ctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctct 37499057  T
Q  470 aagaaata 477  Q
    || |||||    
T  37499058 aataaata 37499065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 326 - 469
Target Start/End: Complemental strand, 14573137 - 14572994
Alignment:
Q  326 catgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  14573137 catgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 14573038  T
Q  426 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  14573037 aaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 275 - 468
Target Start/End: Original strand, 6376236 - 6376424
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||| | ||||| |||||||     ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattt 6376335  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||     | ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  6376336 tcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 37914236 - 37914428
Alignment:
Q  277 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | |||||   | |||||||||| | |||| |||||| || ||||||| ||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtacca-gggtattttaatcatttcacatcacattatcacccctttt 37914334  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
     |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  37914335 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 334 - 468
Target Start/End: Original strand, 24137149 - 24137287
Alignment:
Q  334 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg----ggtgtaaaa 429  Q
    ||||||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||    ||||| |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  430 aggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
     ||||||| ||||||||||||||| |||||||| |||||    
T  24137249 gggtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 460
Target Start/End: Complemental strand, 41188961 - 41188777
Alignment:
Q  277 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||  ||||||| |||| | |||||||  |  |||||||| ||||||| || | ||||||||||||||||||||| ||||||| || ||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctttt 41188862  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 460  Q
    ||| || | |||||||||||||| ||| ||||| |||| ||| | | | ||||| |||||||| ||| ||| |||||||||||||    
T  41188861 catatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatgtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 7e-72; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 275 - 468
Target Start/End: Complemental strand, 30432532 - 30432339
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||| |||||||||| |||||||||||||  || |||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttt 30432433  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  30432432 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||  ||||||||||||  ||| |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 275 - 468
Target Start/End: Complemental strand, 36189408 - 36189216
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||| | ||| |||||||||||||||| |||||||| ||||||||||||| | |||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactccttt 36189310  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36189309 tcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 276 - 465
Target Start/End: Complemental strand, 18184745 - 18184556
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||||| | ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 465  Q
    ||||||||| |||||||||||   |||||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||||| ||||||||    
T  18184645 catctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 275 - 471
Target Start/End: Complemental strand, 31318999 - 31318802
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatt 373  Q
    |||||||||||||| |||||| | ||||||||||||   || | |||| | | |||| ||||| |||||| |||||||||||||||||||||||||| ||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttt 31318900  T
Q  374 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 471  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  31318899 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctctaa 31318802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 277 - 469
Target Start/End: Complemental strand, 10203856 - 10203663
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| ||||||||||| |  || |||||| | |||||| |||||| |||||||||||||||| ||||||||| ||||| ||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  10203756 catctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 275 - 465
Target Start/End: Complemental strand, 12665539 - 12665347
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 373  Q
    |||||||||||||| |||||| | |||||| ||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 12665440  T
Q  374 ttc-atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 465  Q
    ||  |||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12665439 ttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 285 - 467
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  285 atagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctctt 383  Q
    |||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  384 ctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagct 467  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 277 - 462
Target Start/End: Complemental strand, 33726203 - 33726017
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca-tttt 375  Q
    |||||||||||| |||||||| ||||| |||||||     ||||||  |||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 462  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  33726103 catctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 275 - 470
Target Start/End: Complemental strand, 43186220 - 43186025
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||| | ||||||||||||   || |||||| |  |||| ||||||| |||| |||||||||| ||||||||||||||  |||    
T  43186220 taggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttt 43186121  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||  |||||||||  || |||||||||||| |||||| |||||||||| |||||    
T  43186120 tcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactcta 43186025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 448
Target Start/End: Original strand, 42668821 - 42668952
Alignment:
Q  317 tgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgt 415  Q
    |||||||||| ||||  |||||||||| ||||||||| |||||||| |||||||  | | ||| |||||||| |||||||||| |||||||||||| |||    
T  42668821 tgtacatctccatgttgtaggggtattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgt 42668919  T
Q  416 gtgtgggtgtaaaaaggtgtatgccacctaagg 448  Q
    |||||||||| |||  |||||||||||||||||    
T  42668920 gtgtgggtgtcaaagtgtgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 420
Target Start/End: Original strand, 38845023 - 38845165
Alignment:
Q  278 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||||||| ||||| ||||| ||||||| ||  |||||| | | ||||||||||| ||||||||||||||  ||||| |||||||||| | ||     
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccctctt- 38845121  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg 420  Q
    |||| |||||||||| |||||  ||| |||||||| ||||||||    
T  38845122 atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 463
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 463  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||  |||||||| ||||||| |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 277 - 463
Target Start/End: Original strand, 3690602 - 3690788
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    ||||||||||||||||||| | ||||| ||||||| ||  | || ||   |||||| || |||||||| |||||||  || || |||||||||   | ||    
T  3690602 ggaaaaagatagatagacatccttttttatacacctttcatatatattctatgtgtcagaggtatttttgtaatttcgcaacacatcatcacctcatctc 3690701  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 463  Q
    ||||||||||| ||| |||| |  || |||||||| ||||||||| | | ||| | |||||| |||||||| || ||||||||||||    
T  3690702 atctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 446
Target Start/End: Original strand, 35849502 - 35849623
Alignment:
Q  327 atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttca--atgtttttgtcacgtgtcacaaatgtgtgtgggtg 424  Q
    |||||| |||||  ||||| |||||| | |||| |||||| ||| || ||||||||||||| |  || |||||| || ||||||||| |||||||  |||    
T  35849502 atgtgtcaggggggttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtg 35849601  T
Q  425 taaaaaggtgtatgccacctaa 446  Q
    | ||| | ||||||||||||||    
T  35849602 ttaaatgatgtatgccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 7e-72; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 45782658 - 45782851
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||||| ||||| ||||||  ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 45782757  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  45782758 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 36346564 - 36346756
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-tttt 36346662  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  36346663 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 42220962 - 42221154
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| ||||||||||||| ||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  42220962 aggaaaaagataggtagacaccttttt-catacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccccttt 42221060  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    | || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42221061 ttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 276 - 471
Target Start/End: Original strand, 26972201 - 26972397
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 26972300  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 471  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26972301 tcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctaa 26972397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 28307493 - 28307686
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||| |||||||||||||||  || |||||| | | || ||||| ||||||||||||||||||||||||||||||||||| |||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttt 28307592  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  28307593 tcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 275 - 462
Target Start/End: Complemental strand, 31148483 - 31148296
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||||  |||||||||||||  || |  ||| | ||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattt 31148384  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 462  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  31148383 tcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 277 - 470
Target Start/End: Original strand, 7700476 - 7700670
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  7700576 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctcta 7700670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 34108619 - 34108426
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| || ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34108520  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  34108519 tcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 277 - 468
Target Start/End: Original strand, 7699882 - 7700074
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7699982 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 277 - 468
Target Start/End: Original strand, 7700080 - 7700272
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700180 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 277 - 468
Target Start/End: Original strand, 7700278 - 7700470
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700378 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 273 - 465
Target Start/End: Complemental strand, 34828260 - 34828069
Alignment:
Q  273 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 372  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | ||| |||||||||||||||||||||||||||||||||||||| |  |    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcact 34828161  T
Q  373 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 465  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||    
T  34828160 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 13108339 - 13108148
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||||||| ||||| ||||||| ||  |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||     
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt- 13108241  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||    
T  13108240 catctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 275 - 468
Target Start/End: Original strand, 5811161 - 5811354
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | ||||||||||||| ||||||| |||||||| |||||    
T  5811261 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 275 - 462
Target Start/End: Complemental strand, 23980324 - 23980137
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||| | ||||| |||||   |   |||||||||||| |||||| |||||||||||||||| |||||| ||| |||||| |||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttt 23980225  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 462  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  23980224 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 291 - 468
Target Start/End: Complemental strand, 30887877 - 30887700
Alignment:
Q  291 agacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaa 390  Q
    ||||||| ||||||||||||   || | |||| | ||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  30887877 agacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaa 30887778  T
Q  391 tgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  30887777 tgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 329 - 464
Target Start/End: Original strand, 21807374 - 21807509
Alignment:
Q  329 gtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaa 428  Q
    |||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||    
T  21807374 gtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaa 21807473  T
Q  429 aaggtgtatgccacctaaggtggttcatgtataaga 464  Q
    | ||||||||||| ||||||||||||||||||||||    
T  21807474 atggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 268 - 426
Target Start/End: Complemental strand, 46475225 - 46475066
Alignment:
Q  268 taagaaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgtta-ggggtattttagtaattttacatcatatcatc 366  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||  |  |||||||||||||||||| |||||||||||||||||| |||||| ||| ||    
T  46475225 taagatataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtc 46475126  T
Q  367 acccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 426  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  46475125 accccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 276 - 447
Target Start/End: Complemental strand, 36957620 - 36957450
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||||||  ||||| ||||||| ||  | |||| | |||||||| ||||||||||||||||||||||| | || |||| |||||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacattacattatcatccatttt 36957522  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaag 447  Q
    ||||||||||| |||| ||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  36957521 catctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 319 - 468
Target Start/End: Complemental strand, 15020428 - 15020282
Alignment:
Q  319 tacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 418  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||| ||||||||||||||||||||| ||  |||||||||  ||||    
T  15020428 tacatctcatgtgttagggatattttagtaatttcacatcatatcttcaccc-ctttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgtg 15020332  T
Q  419 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||| | ||||||||||||| ||||||| |||||||| |||||    
T  15020331 tgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 334 - 463
Target Start/End: Complemental strand, 38321143 - 38321014
Alignment:
Q  334 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 433  Q
    |||| |||||||||| ||| |||||| | |||||||   | |||| ||||||||||||||||||| ||| |||||||| ||| ||||||||| |||| ||    
T  38321143 agggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgt 38321044  T
Q  434 gtatgccacctaaggtggttcatgtataag 463  Q
    |||||||||||||| ||||| |||||||||    
T  38321043 gtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 429
Target Start/End: Original strand, 20086690 - 20086780
Alignment:
Q  339 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 429  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||||||| |||||||||| ||  |||| ||||||| |||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaa 20086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 29953570 - 29953665
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccc 370  Q
    ||||||||||||| |||||||| ||||||||||||   || |||| |  || |||| |||||| ||||| ||||||||||||||||||||||||||    
T  29953570 aggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  373 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 426  Q
    ||||||||||| ||||||||| |||| ||| | |||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 42950034 - 42950111
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 352  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| | ||||| | |||||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 463
Target Start/End: Original strand, 42950157 - 42950189
Alignment:
Q  431 ggtgtatgccacctaaggtggttcatgtataag 463  Q
    |||||||||||||||||||||||||||| ||||    
T  42950157 ggtgtatgccacctaaggtggttcatgtctaag 42950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 273 - 470
Target Start/End: Complemental strand, 44000185 - 43999987
Alignment:
Q  273 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcaccca 371  Q
    |||||||||||||||| |||||||  ||||||||||||  ||| |||||  | |||||| |||| ||||||| ||||||||||||||||||||||||||     
T  44000185 aataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccct 44000086  T
Q  372 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44000085 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctcta 43999987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 277 - 469
Target Start/End: Complemental strand, 21559753 - 21559560
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||||||||||| |||||||||||||  || |||||| | | ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 275 - 469
Target Start/End: Original strand, 51339781 - 51339973
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||| |||||||| |||||||||||||  || ||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttt 51339880  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  51339881 tcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 36370337 - 36370530
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||| ||  ||||||||||||  ||| | |||| | |||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 279 - 469
Target Start/End: Complemental strand, 36749596 - 36749405
Alignment:
Q  279 aaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 377  Q
    |||||||||| |||||||  ||||||||||||  ||| |||||| | |||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  378 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 46111943 - 46112136
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| ||||||||||||| ||| | |||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||| ||||    
T  46112043 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 278 - 468
Target Start/End: Complemental strand, 22894870 - 22894680
Alignment:
Q  278 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||||||||||||| |||| |||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 276 - 468
Target Start/End: Original strand, 34749896 - 34750089
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||  ||||| | ||||||||||||   || |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34749995  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34749996 tcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 276 - 469
Target Start/End: Original strand, 30735494 - 30735687
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    | || ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  30735594 t-atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 38231484 - 38231293
Alignment:
Q  277 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || || ||| |||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-atttt 38231386  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38231385 catatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 276 - 465
Target Start/End: Complemental strand, 48200878 - 48200688
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||| | ||||||||||||  ||| |||||| | | |||| ||| |||||||| ||||||||||||||||||||||| || |||    
T  48200878 aggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttt 48200779  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 465  Q
    ||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  48200778 tcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 272 - 471
Target Start/End: Original strand, 39467096 - 39467295
Alignment:
Q  272 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 371  Q
    ||||||||||||||||| || ||||| ||||| |||||||     |||||| ||||||||||| || |||||||||||||| | |||| ||| ||||||     
T  39467096 aaataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccc 39467195  T
Q  372 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 471  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| |||||||| || ||| ||||||| ||| |||| ||||||||    
T  39467196 ttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctctaa 39467295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 370 - 468
Target Start/End: Complemental strand, 29460758 - 29460660
Alignment:
Q  370 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29460758 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 370 - 468
Target Start/End: Complemental strand, 29471610 - 29471512
Alignment:
Q  370 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29471610 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 277 - 470
Target Start/End: Original strand, 39072278 - 39072466
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||||| |||||||  ||||| ||||| | ||  |||||| | ||||||| | ||||||||||||||     ||||| ||||||||||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttc 39072372  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
    ||||||||||| ||||||| || ||| |||||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||    
T  39072373 atctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctcta 39072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 339 - 469
Target Start/End: Complemental strand, 50966256 - 50966130
Alignment:
Q  339 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 438  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  439 ccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||| | |||||||||||||||||||    
T  50966159 ccacctaagat-gttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 339 - 469
Target Start/End: Complemental strand, 51069391 - 51069265
Alignment:
Q  339 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 438  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  439 ccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||| | |||||||||||||||||||    
T  51069294 ccacctaagat-gttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 460
Target Start/End: Original strand, 20856153 - 20856334
Alignment:
Q  277 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| | ||| |||||| | |||||||  |  |||||| | ||||||| |||||||||| |||||||||| |||| ||||||| || ||||    
T  20856153 ggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt 20856251  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 460  Q
     || |||| |||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  20856252 -atatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 273 - 376
Target Start/End: Complemental strand, 29473004 - 29472901
Alignment:
Q  273 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 372  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | |||||||||||||||||||||||||||||||||||||||||| || |    
T  29473004 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccct 29472905  T
Q  373 tttc 376  Q
    ||||    
T  29472904 tttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 334 - 446
Target Start/End: Complemental strand, 53638269 - 53638157
Alignment:
Q  334 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 433  Q
    ||||||||||||| |||||||||||| ||||||||||  | |||||||||||||| ||||||||  ||| |||||| | ||||||||||||| ||| |||    
T  53638269 aggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggt 53638170  T
Q  434 gtatgccacctaa 446  Q
    |||||||||||||    
T  53638169 gtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 29820397 - 29820483
Alignment:
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtata 461  Q
    ||||||||||||| ||||||||||  || | |||||| ||| ||||||||| |||  |||||||||||||||||||||  |||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 277 - 464
Target Start/End: Complemental strand, 6910 - 6722
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||| ||||||||||||||||   || |||||| | |||||| |||||| ||||| |||||||||||||||||||||||||| ||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 464  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6810 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 39371119 - 39370927
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39371019 catctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 277 - 470
Target Start/End: Complemental strand, 13347320 - 13347126
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctcta 13347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 276 - 469
Target Start/End: Original strand, 40887940 - 40888134
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | | || | |||| |||||||||||||||||||||||||||| ||||| |||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttt 40888039  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  40888040 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 277 - 469
Target Start/End: Original strand, 1815619 - 1815808
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 376  Q
    |||||||||||| |||||||||||||||||| |  | |   ||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaaat---gtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  377 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  1815716 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 2237468 - 2237276
Alignment:
Q  277 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | | | || |||||||||||| |||||||||||||||||||||||||| ||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  2237368 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 275 - 469
Target Start/End: Original strand, 27553372 - 27553565
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||| ||||||||||||| |||||||||||||  || |||||| |  |||||||||| |||||||||||||||||||||| || ||||||  |||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttt 27553470  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||    
T  27553471 tcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 332 - 470
Target Start/End: Original strand, 9408094 - 9408232
Alignment:
Q  332 ttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaag 431  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 9408193  T
Q  432 gtgtatgccacctaaggtggttcatgtataagagctcta 470  Q
    | ||||| ||||| |||||||||||||||||||||||||    
T  9408194 gcgtatgtcacctgaggtggttcatgtataagagctcta 9408232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 457
Target Start/End: Complemental strand, 14831737 - 14831555
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| | | | || |||||||||||| | |||||||||||||||||||||||| |||    
T  14831737 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttt 14831638  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatg 457  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14831637 tcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 276 - 429
Target Start/End: Complemental strand, 31800750 - 31800597
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||||  ||||||| |||||||||||||  ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 429  Q
    ||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  31800650 catcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaa 31800597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 17225451 - 17225316
Alignment:
Q  334 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 433  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |     
T  17225451 aggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--ga 17225354  T
Q  434 gtatgccacctaaggtggttcatgtataagagctctaa 471  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17225353 gtatgccacctaaagtggttcatgtataagagctctaa 17225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 277 - 468
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  277 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    |||||||||||| |||||| |||||||| | | |||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    || |||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 372 - 468
Target Start/End: Original strand, 33404531 - 33404627
Alignment:
Q  372 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 278 - 469
Target Start/End: Original strand, 4300544 - 4300735
Alignment:
Q  278 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 377  Q
    ||||||||| |||||||| | ||||| ||||| |  |  |||||| |||||||||||||| ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  378 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    |||||| |||||||||||||| ||  |||||||||| ||||||||||||||| | | |||| |||||||  |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 42683792 - 42683670
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    |||||||||||||||||||| | |||||||||||||  || |||||| | | || | ||||||||||||||||||||||||||||||||| || || |||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttt 42683693  T
Q  375 tcatctcttctttcaatgttttt 397  Q
    |||||||||||||||||||||||    
T  42683692 tcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 277 - 459
Target Start/End: Original strand, 41003850 - 41004031
Alignment:
Q  277 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| ||| |||||||| | |||||||  |  |||||| | ||| ||| |||| || |||||||||||||||||| ||||||| || ||||    
T  41003850 ggaaaaagatagacagaaacctttttgttatacacctctcatgtacaccccatatgtcagggata-tttagtaattttacatcacatcatcatccctttt 41003948  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgta 459  Q
     || |||| ||||||| |||||| ||| ||||| |||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  41003949 tatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 471
Target Start/End: Original strand, 19124532 - 19124664
Alignment:
Q  337 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 436  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||| |||  ||||||| |||||||||||||  ||| |||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgt-caaatgtgta 19124629  T
Q  437 tgccacctaaggtggttcatgtataagagctctaa 471  Q
    ||||| ||||| | || ||||||||||| ||||||    
T  19124630 tgccatctaagatagtccatgtataagaactctaa 19124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 465
Target Start/End: Complemental strand, 12164388 - 12164254
Alignment:
Q  334 aggggtattttagtaattttacatcatatcatcacccattttcatctct---tctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaa 430  Q
    ||||| ||||||||||||| |||||| | ||||||||  |  |||||||   |||||||||||||||| ||| || ||||| |||||||| || | |||     
T  12164388 aggggcattttagtaatttcacatcacaccatcaccctctcccatctcttcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaag 12164289  T
Q  431 ggtgtatgccacctaaggtggttcatgtataagag 465  Q
      ||| ||||||||||| |||||||||||||||||    
T  12164288 aatgtgtgccacctaagatggttcatgtataagag 12164254  T

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Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 272 - 469
Target Start/End: Original strand, 3986900 - 3987097
Alignment:
Q  272 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 371  Q
    ||||||||||||||||| |||||| | |||||||||||    || |||| | | ||||| ||| |||||||| |||||||||||||||||| |||| ||     
T  3986900 aaataggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccc 3986999  T
Q  372 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3987000 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 3987097  T

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Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 276 - 469
Target Start/End: Original strand, 3118045 - 3118239
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 374  Q
    ||||||||||||| |||||| | ||||||||||| |  || |||||| || ||||| ||||||||||||||||||||||||||||| ||| ||||| |||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccaccctttt 3118144  T
Q  375 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    | |||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  3118145 ttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

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Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 278 - 468
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  278 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 377  Q
    ||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  378 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

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Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 24208636 - 24208444
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||||| | ||||| |||||||  |  | |||| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||  |||||| ||||||| | ||||| |||||||| |||||    
T  24208536 catctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

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Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 13697760 - 13697569
Alignment:
Q  276 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 375  Q
    ||||||||||||| |||| | | |||||||||||  | || |||||| | |||||||||| | |||||||||||||||| ||||||||||||||| ||||    
T  13697760 aggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  376 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 468  Q
    ||||||||||||||||||||||  ||||| |||||||||||| | ||||||||| |||| ||| || ||||| ||||| ||||||||||||||    
T  13697660 catctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

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Target: chr6; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 274 - 469
Target Start/End: Original strand, 15345656 - 15345849
Alignment:
Q  274 ataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 373  Q
    |||||||||| |||| |||||| ||||||||||||||   || |||||| |  |||| ||||||| |||| |||||||| | ||||||||||||||  ||    
T  15345656 ataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcacctttt 15345755  T
Q  374 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 469  Q
    ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||  || ||||||||||||||||||| |||||||||||||||    
T  15345756 ttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 469
Target Start/End: Original strand, 7674598 - 7674628
Alignment:
Q  439 ccacctaaggtggttcatgtataagagctct 469  Q
    |||||||||||||||||||||||||||||||    
T  7674598 ccacctaaggtggttcatgtataagagctct 7674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 275 - 464
Target Start/End: Original strand, 87160 - 87350
Alignment:
Q  275 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacat--catatcatcacccat 372  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||| ||   ||||||||||   |    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatt 87259  T
Q  373 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 464  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  87260 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  403 gtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 441  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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