View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_41 (Length: 217)
Name: NF12679_low_41
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 4721725 - 4721538
Alignment:
| Q |
17 |
atttcgatcacatggtatttgatgcatagatgaaaacaacttatcgtgaagaatgctttgatcataattccttatctatatgaatacatcatatctaatg |
116 |
Q |
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| T |
4721725 |
atttcgatcacatggtatttgatgcatagatgaaaacaacttatcgtgaagaatgctttgatcataattccttatctagatgaatacatcatatctaatg |
4721626 |
T |
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| Q |
117 |
ttaatattttgtaattg--atcattatatcgactttgatactaataccttatcttagattttggtaattcatacgttccttttagcag |
202 |
Q |
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| T |
4721625 |
ttaatattttgtaattgacatcactacatcgactttgatactaataccttatcttagattttggtaattcatacattccttttagcag |
4721538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 54923641 - 54923503
Alignment:
| Q |
69 |
atgctttgatcataattccttatctatatgaatacatcatatctaatgttaatattttgtaattga--tcattatatcgactttgatactaataccttat |
166 |
Q |
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| T |
54923641 |
atgctttgatattaattccttatataaatgaatatattgtagctaatgttaatatatggtaatagacatcataacatcggctttgataccaattccttat |
54923542 |
T |
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| Q |
167 |
cttagattttg---gtaattcatacgttccttttagcag |
202 |
Q |
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| T |
54923541 |
ctaagattttggtagtaattcatattttccttttagcag |
54923503 |
T |
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