View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12679_low_43 (Length: 203)
Name: NF12679_low_43
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 8080558 - 8080705
Alignment:
| Q |
17 |
gagagaagcgtatttcaccctagtccccctatgaaaaaagaaactcaacccatcccggacgaatcgctattttctccaacaaatatataactatcatggt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8080558 |
gagagaagcgtatttcaccctagtccccctatgaaaaaagaaactccacccgtcccggacgaatcgctattttctccaacaaatatataactatcatggt |
8080657 |
T |
|
| Q |
117 |
tggttaaataagaaaaggatacagaacaatcaaactattttataatgg |
164 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8080658 |
tggttaaataaaaaaaggatacagaacaatcaaactattttataatgg |
8080705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 29816868 - 29816714
Alignment:
| Q |
8 |
agaagcagagagagaagcgtatttcaccctagtccccctatgaaaaaagaaactcaacccatcccggacgaatcgctattttctccaacaaatatataac |
107 |
Q |
| |
|
||||||| |||||||||| ||||||| ||| |||| ||||||||| ||||||| || | |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29816868 |
agaagcactgagagaagcgcatttcacgctaatccc--tatgaaaaaggaaactccactcgtcccggacgaatcgctattttctccaacaaatctataac |
29816771 |
T |
|
| Q |
108 |
tatcatggttggttaaataagaaaaggatacagaacaatcaaactattttataatgg |
164 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29816770 |
tatcatggttggtaaaataaaaaaaggatacagaacaatcaaactattttataatgg |
29816714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University