View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_7 (Length: 501)
Name: NF12679_low_7
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 4009091 - 4009563
Alignment:
| Q |
19 |
accatgcactccttggtcttgaccttcagtaataagacgggcataaacaatagcatgtgtggatattttacccaacccaccaggccaccactgttttaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4009091 |
accatgcactccttggtcttgaccttcagtaataagacgggcataaacaatagcatgtgtggatattttacccaacccaccaggccaccactgttttaaa |
4009190 |
T |
|
| Q |
119 |
tcaacaataaaaggtcatgatatatccaaatacagacaaataaacttgaggaatgaatgagagaagcacaattgttttccctgattgcacttgtcagtgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4009191 |
tcaacaataaaaggtcatgatatatccaaatacagacaaataaacttgaggaatgaatgagagaaacacaattgttttccctgattgcacttgtcagtgc |
4009290 |
T |
|
| Q |
219 |
acttaataacattataagattatagaatcccaaacagaaaataactgtaaaagctttcgggagacatcacccatttcactcactttgctggaagtcaatg |
318 |
Q |
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| T |
4009291 |
acttaataacattataagattatagaatcccaaacagaaaataactgtaaaagctttcgggagacatcacccatttcactcactttgctggaagtcaatg |
4009390 |
T |
|
| Q |
319 |
tggggctgtgaataatgaactcgtctgttttgggatcaaatgttgcagttgtttctagcccttgaacattggatccatgaccaagttcagtttgggcata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4009391 |
tggggctgtgaataatgaactcgtctgttttgggatcaaatgttgcagttgtttctagcccttgaacattggatccatgaccaagttcagtttgggcata |
4009490 |
T |
|
| Q |
419 |
gcaaccaattatttgcatcttataagctagaggtaaccatttttcctgctgctcatcagttccttgtcctttg |
491 |
Q |
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| T |
4009491 |
gcaaccaattatttgcatcttataagctagaggtaaccatttttcctgctgctcatcagttccttgtcctttg |
4009563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 291 - 491
Target Start/End: Complemental strand, 41513604 - 41513404
Alignment:
| Q |
291 |
atttcactcactttgctggaagtcaatgtggggctgtgaataatgaactcgtctgttttgggatcaaatgttgcagttgtttctagcccttgaacattgg |
390 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
41513604 |
attttactcactttgctggaagtcaatgtggggctatgaatgacaaactcgtctgttttgggatcaaatgttgccgttgtttctagcccttgaacattag |
41513505 |
T |
|
| Q |
391 |
atccatgaccaagttcagtttgggcatagcaaccaattatttgcatcttataagctagaggtaaccatttttcctgctgctcatcagttccttgtccttt |
490 |
Q |
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| T |
41513504 |
atccatgaccaagttcggtttgggcatagcaaccaattatttgcatcctttgtgccaaaggcagccacttttgctgctgttcctcggttccttgtccttt |
41513405 |
T |
|
| Q |
491 |
g |
491 |
Q |
| |
|
| |
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|
| T |
41513404 |
g |
41513404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 41513945 - 41513841
Alignment:
| Q |
19 |
accatgcactccttggtcttgaccttcagtaataagacgggcataaacaatagcatgtgtggatattttacccaacccaccaggccaccactgttttaaa |
118 |
Q |
| |
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|||||||||||| || ||| |||| |||||||| || ||||||||||||| ||||||||| || | ||||||||| ||||||||||||||||| |||||| |
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| T |
41513945 |
accatgcactccatgatctcgaccatcagtaattagtcgggcataaacaacagcatgtgttgacactttacccaatccaccaggccaccactg-tttaaa |
41513847 |
T |
|
| Q |
119 |
tcaaca |
124 |
Q |
| |
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|||||| |
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|
| T |
41513846 |
tcaaca |
41513841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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