View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12679_low_8 (Length: 486)
Name: NF12679_low_8
Description: NF12679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12679_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 24 - 469
Target Start/End: Complemental strand, 29009272 - 29008827
Alignment:
| Q |
24 |
cttcttcttcattgctctgagatttcactttctgaatttgcaggtacataaccaaattctctgttctgaattcataacaaactcttcaaccgcgcaaaga |
123 |
Q |
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| T |
29009272 |
cttcttcttcattgctctgagatttcactttctgaatttgcaggtacataaccacattctctgttctgaattcataacaaactcttcaaccgcgcaaaga |
29009173 |
T |
|
| Q |
124 |
tcatatatgttcgcttcaacttcttgattaaattcttcaaattccgattctggtttctttttattcaaattcaccttcccatttctatataatttgcatt |
223 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29009172 |
tcatataggttcgcttcaacttcttgattacattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcatt |
29009073 |
T |
|
| Q |
224 |
tgcacgctactattttcactgaaactaattcttcaatttcatttgacactgttacggtgttatattcattcaattagatgaagaatttgaatcgaagcta |
323 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
29009072 |
tgcacgctacaattttcactgaaactaattcttcaattgcatttgatactgttacggtgttgtattcattcgattagatgaagaatttgaatcgaagcta |
29008973 |
T |
|
| Q |
324 |
tagttaactctgtgnnnnnnnnnnnnnnnnnnnnnnnntaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcaattc |
423 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29008972 |
tagttaactctgtgtttttgattttttggtttgatttgtaggaaaatgaggccagtctgggcagtgaaagctatgttcgtggtcgtcttggcttcgattc |
29008873 |
T |
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| Q |
424 |
tcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttc |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008872 |
tcttccgttgcgtttgtggtggtaaccacaccgttggtggtgcttc |
29008827 |
T |
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