View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1268-Insertion-1 (Length: 366)
Name: NF1268-Insertion-1
Description: NF1268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1268-Insertion-1 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 192 - 366
Target Start/End: Original strand, 20769396 - 20769571
Alignment:
| Q |
192 |
gacacttttatggtgtataagttttggatattttggcatacatacatgggaggannnnnnnctgagaacttttcaatcaccagattattataatcttaat |
291 |
Q |
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| T |
20769396 |
gacacttttatggtgtataagttttggatattttggcatacatacatgggaggagggggg-ctgagaacttttcaatcaccagattattataatcttaat |
20769494 |
T |
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| Q |
292 |
tttagtg--ggatcagaaggaaaagttcttaccatttcagtttcattttgagaagagattgggtcaggaatttaggt |
366 |
Q |
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| T |
20769495 |
tctattgttggatcagaaggaaaaggtcttaccatttcagtatcattttgagaagagatcgggtcaggaatttaggt |
20769571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 20769243 - 20769312
Alignment:
| Q |
95 |
gtgaacgtgcggttcttagagatatatagtcaaattgcaaaaaactacatgtgcactggaataaaatata |
164 |
Q |
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| T |
20769243 |
gtgaacgtgcggttcttagagatatatagtcaaattgcaaaaaactacatgtgcactggaataaaatata |
20769312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 20769166 - 20769223
Alignment:
| Q |
8 |
gaatctagctttcattgnnnnnnncttcatttatttaattaatttccctggttcttag |
65 |
Q |
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| T |
20769166 |
gaatctagctttcattgtttttttcttcatttatttaattaatttccctggttcttag |
20769223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 20757069 - 20757102
Alignment:
| Q |
95 |
gtgaacgtgcggttcttagagatatatagtcaaa |
128 |
Q |
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| T |
20757069 |
gtgaacgtgcggttcttagagatacatagtcaaa |
20757102 |
T |
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