View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12680_high_16 (Length: 294)
Name: NF12680_high_16
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12680_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 3659627 - 3659355
Alignment:
| Q |
1 |
agattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattata |
100 |
Q |
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| T |
3659627 |
agattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcattacattata |
3659528 |
T |
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| Q |
101 |
ttcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatc |
200 |
Q |
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| T |
3659527 |
ttcatgtaaggctttgtctaccctttgatttgtaatgtttgattggattctaggacaatttgattggacttagattgtttggtaattggtagatctcatc |
3659428 |
T |
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| Q |
201 |
tgtgtgtctaattggcatatgattcataaatggatttgttatgttccactttaattggcatttagataattgtg |
274 |
Q |
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| T |
3659427 |
tgtgtgtctaattggcatttggtt-ataaatggatttgttatgttccacttcaattggaatttagataagtgtg |
3659355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 3653361 - 3653106
Alignment:
| Q |
1 |
agattctgttctctgctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaattttgacgtgaaatgtcgttacattata |
100 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3653361 |
agattctgttctctgctccactgccgcttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaacttttgacgtgaaatgtcgttacattata |
3653262 |
T |
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| Q |
101 |
ttcatgtaaggctttgtctaccctttgatttgtaatgtttgattgtattctaggagaatttgattggacttagattgtttggtaattggtagatctcatc |
200 |
Q |
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| T |
3653261 |
ttcatgtaaggttttgtttaccctttgatttgtaatgtttgat--tattctaggagaatttgactggacttagattgtttggtaactggtagatctcatc |
3653164 |
T |
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| Q |
201 |
tgtgtgtctaattggcatatgattc-ataaatggatttgttatgttccactttaattg |
257 |
Q |
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| T |
3653163 |
tgcgtgtctaattggcatttggttctataaatggatttgttatgttccacttcaattg |
3653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 3649234 - 3649181
Alignment:
| Q |
20 |
attgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
73 |
Q |
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| T |
3649234 |
attgccacttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
3649181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 3657245 - 3657199
Alignment:
| Q |
124 |
tttgatttgtaatgtttgattgtattctaggagaatttgattggact |
170 |
Q |
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| T |
3657245 |
tttgatttgtaatgtttgactgtattctaggagaacttgattggact |
3657199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 36164634 - 36164576
Alignment:
| Q |
15 |
gctccattgccacttaaaatggaaagcagaactgatttgaagagtaaaggcgtgaaaat |
73 |
Q |
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| T |
36164634 |
gctccattgccgcttaagatggaaagcagaactgatttgaagagtaaaagtgtgaaaat |
36164576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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