View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12680_high_17 (Length: 291)

Name: NF12680_high_17
Description: NF12680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12680_high_17
NF12680_high_17
[»] chr2 (4 HSPs)
chr2 (1-291)||(20169637-20169928)
chr2 (3-237)||(20143584-20143818)
chr2 (179-238)||(20250940-20250999)
chr2 (188-231)||(20358303-20358346)
[»] chr3 (7 HSPs)
chr3 (103-171)||(47398186-47398254)
chr3 (107-171)||(46490210-46490274)
chr3 (120-171)||(5155459-5155510)
chr3 (106-171)||(46478467-46478532)
chr3 (106-171)||(51942268-51942333)
chr3 (108-171)||(47414830-47414893)
chr3 (105-161)||(46550161-46550217)
[»] chr8 (1 HSPs)
chr8 (3-87)||(9677601-9677685)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 20169928 - 20169637
Alignment:
Q  1 aaaacaacaacttgtcgacttcctctgcttcaaatccaccaatcatcttaactccttcgcctcttatctccattccgtcctactcaaggacgttgctcat 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||    
T  20169928 aaaacaacaacttgtcgacttcctccgtttcaaatccaccaatcatctcaattccttcgcctcttatctccattccgtcctactgaaggacgttgctcat 20169829  T
Q  101 ggtcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaatagtacgtgataattacaaagcaacgccgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20169828 ggtcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaatagtacgtgataattacaaagcaacgccgg 20169729  T
Q  201 cttcacttgattttctaaccaaggtgtgcatatctcag-annnnnnnnncttcttgaaataacctcgttggtgctatcctctggtgccttct 291  Q
    ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||    
T  20169728 cttcacttgattttctaaccaaggtgtgcatatctcagtttttttttttcttcttgaaataacctcgttggtgctatcctctggtgccttct 20169637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 20143584 - 20143818
Alignment:
Q  3 aacaacaacttgtcgacttcctctgcttcaaatccaccaatcatcttaactccttcgcctcttatctccattccgtcctactcaaggacgttgctcatgg 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  20143584 aacaacaacttgtcgacttcctccgcttcaaatccaccaatcatcttaactccttcacctcttatctccattccgtcctactcaaggactttgctcatgg 20143683  T
Q  103 tcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaatagtacgtgataattacaaagcaacgccggct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20143684 tcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaatagtacgtgataattacaaagcaacgccggct 20143783  T
Q  203 tcacttgattttctaaccaaggtgtgcatatctca 237  Q
    ||||||||||||||||||||||| |||||||||||    
T  20143784 tcacttgattttctaaccaaggtttgcatatctca 20143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 20250940 - 20250999
Alignment:
Q  179 gataattacaaagcaacgccggcttcacttgattttctaaccaaggtgtgcatatctcag 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20250940 gataattacaaagcaacgccggcttcacttgattttctaaccaaggtgtgcatatctcag 20250999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 20358303 - 20358346
Alignment:
Q  188 aaagcaacgccggcttcacttgattttctaaccaaggtgtgcat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20358303 aaagcaacgccggcttcacttgattttctaaccaaggtgtgcat 20358346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 47398254 - 47398186
Alignment:
Q  103 tcgcctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaat 171  Q
    |||||||||||| ||| |||| || |||||||||||||||||||| ||||||||||||| |||||||||    
T  47398254 tcgcctctctttcgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 47398186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 46490210 - 46490274
Alignment:
Q  107 ctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaat 171  Q
    |||||||||||||| ||||| ||||| ||| |||||||||| ||||||||||||| |||||||||    
T  46490210 ctctcttttgtcgacggtgtgtgggtggaaaaaaccctttctcttcaaccttccttcaaacaaat 46490274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 5155459 - 5155510
Alignment:
Q  120 atggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaat 171  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  5155459 atggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaat 5155510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 46478467 - 46478532
Alignment:
Q  106 cctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaat 171  Q
    ||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||| | |||||||    
T  46478467 cctctctttcgtcgacggtgtttgggttgatcaaaccctttctcttcaaccttccttccaacaaat 46478532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 51942268 - 51942333
Alignment:
Q  106 cctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaat 171  Q
    |||||| || ||||||||||||||| | ||| |||||||||| ||||||||||||| |||||||||    
T  51942268 cctctccttcgtcgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 51942333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 47414893 - 47414830
Alignment:
Q  108 tctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcctccaaacaaat 171  Q
    ||||||||||| ||||  |||||||||||||| ||||||| ||| ||||||||| |||||||||    
T  47414893 tctcttttgtcaatggcctatgggttgaacaatccctttctcttaaaccttccttcaaacaaat 47414830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 46550217 - 46550161
Alignment:
Q  105 gcctctcttttgtcgatggtgtatgggttgaacaaaccctttcgcttcaaccttcct 161  Q
    |||||||||| ||| ||||||  ||| |||||||||||||||| |||||||||||||    
T  46550217 gcctctctttcgtcaatggtgcgtggattgaacaaaccctttctcttcaaccttcct 46550161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 9677685 - 9677601
Alignment:
Q  3 aacaacaacttgtcgacttcctctgcttcaaatccaccaatcatcttaactccttcgcctcttatctccattccgtcctactcaa 87  Q
    ||||||| ||| ||||||||||| | |||||||||| | ||||||| |||||||||| |||| |||||| ||| ||||| |||||    
T  9677685 aacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctgtcctcctcaa 9677601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University